BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0266.p
         (502 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309427|ref|YP_003773519.1| Mg(2+) chelatase family protein...   786   0.0  

>gi|300309427|ref|YP_003773519.1| Mg(2+) chelatase family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 507

 Score =  786 bits (2029), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/500 (79%), Positives = 441/500 (88%)

Query: 1   LRSRALAGMSAPPVTVEVHLANGLPAFTIVGLPEAEVKEAKDRVRAALQNARFEFPARRI 60
           LRSRALAGM+APPVTVEVHLANGLP+F IVGLPEAEVKEA+DRVRAALQNARFEFPARRI
Sbjct: 6   LRSRALAGMNAPPVTVEVHLANGLPSFAIVGLPEAEVKEARDRVRAALQNARFEFPARRI 65

Query: 61  TVNLAPADLPKDSGRFDLPIALGILAASEQMPADRLDDHEYAGELSLSGQLLPIRGALAM 120
           TVNLAPADLPK+SGRFDL IALGILAAS+Q+P DRLDD+EYAGELSLSGQLLPIRGALAM
Sbjct: 66  TVNLAPADLPKESGRFDLAIALGILAASQQIPGDRLDDYEYAGELSLSGQLLPIRGALAM 125

Query: 121 TCAMQREQQQDGHRRSFILPAANADEAALLPEAQILPATSLLDVCTHFSTRDPAARLQRH 180
           TCAMQ     D  RR+FILPAANADEAAL+ +A+I+PA SLL+VC HF++RD + RL RH
Sbjct: 126 TCAMQHGASADERRRAFILPAANADEAALVTQAEIVPARSLLEVCAHFTSRDESTRLARH 185

Query: 181 QPQPVGKRAAYPDFSDIKGQLQARRAMEVAAAGQHSLLLVGPPGAGKSMLATRFPGILPP 240
           +PQ       YPDFS+IKGQL ARRAMEVAAAG+HS+LLVGPPGAGKSMLATRFPGILPP
Sbjct: 186 RPQQDALAPVYPDFSEIKGQLLARRAMEVAAAGRHSMLLVGPPGAGKSMLATRFPGILPP 245

Query: 241 MTQDEALESAAVQSLSGSFDIARWRQRPYRAPHHTASAVALVGGGSSPRPGEISLAHHGV 300
           MT+ EALESAAV+SL+G FD ARWRQRP+RAPHHTASAVALVGGGS PRPGEISLAHHGV
Sbjct: 246 MTEAEALESAAVRSLTGGFDPARWRQRPFRAPHHTASAVALVGGGSPPRPGEISLAHHGV 305

Query: 301 LFLDEIAEYPRSVLDVLRQPMESGHIVISRAARQAQFPARFQLIAAMNPCPCGQYGDSQG 360
           LFLDEIAEY RSVL+VLRQPMESG I ISRAARQA FPARFQL+AAMNPCPCG +G + G
Sbjct: 306 LFLDEIAEYRRSVLEVLRQPMESGQITISRAARQADFPARFQLLAAMNPCPCGYHGQASG 365

Query: 361 RCRCTPELVKRYQARLSGPLLDRIDMQLHVNALSPAELAVQQPGETSAAIAERVARAFER 420
           +CRC+PE+V+RYQ RLSGPLLDRIDMQL V ALSP ELAVQ  GE++A IA RVA AFER
Sbjct: 366 QCRCSPEMVRRYQQRLSGPLLDRIDMQLQVAALSPGELAVQASGESTARIAARVAVAFER 425

Query: 421 QRQRRGKPNSQLGGSEIDRHCQHDVAAAQLLQAAMLRLNWSARAYHRVLKLARTIADLAE 480
           Q  R+GKPNS L G+EIDRHCQ    AAQLLQ AMLRL WSARAYHRVLKLART+ADLA 
Sbjct: 426 QISRQGKPNSALAGAEIDRHCQPGPDAAQLLQTAMLRLGWSARAYHRVLKLARTMADLAA 485

Query: 481 SDVITQAHVAEAVQYRRMLA 500
           ++ I + HVAEA+QYRR L+
Sbjct: 486 AEQIDRQHVAEAIQYRRGLS 505


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.133    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,593,044
Number of extensions: 68753
Number of successful extensions: 379
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 379
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 413
Effective length of database: 1,198,455
Effective search space: 494961915
Effective search space used: 494961915
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)