BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0257.p
         (608 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309436|ref|YP_003773528.1| phosphoenolpyruvate-protein pho...  1132   0.0  

>gi|300309436|ref|YP_003773528.1| phosphoenolpyruvate-protein
           phosphotransferase transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 595

 Score = 1132 bits (2927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 556/584 (95%), Positives = 571/584 (97%)

Query: 1   VSQGIAIGRAHLMAPAALDVKHYLIAPDQVEAEIDRLRSAVKAVHQELHIIRSELPKDAP 60
           VSQGIAIGRAHLMAPAALDVKHYLIA DQVEAEI+RL+SAVKAVHQELH IRSELP++AP
Sbjct: 11  VSQGIAIGRAHLMAPAALDVKHYLIAADQVEAEIERLKSAVKAVHQELHTIRSELPREAP 70

Query: 61  PELGAFIDVHSLILSDPMLAEVPQDIIRHRYYNAEWALVTQIEELSAQFDEIEDPYLRER 120
           PELGAFIDVHSLILSDPMLAEVPQDIIRHRYYNAEWALVTQIEELSAQFDEIEDPYLRER
Sbjct: 71  PELGAFIDVHSLILSDPMLAEVPQDIIRHRYYNAEWALVTQIEELSAQFDEIEDPYLRER 130

Query: 121 KADIQQVGERILKILTGSATHLPPTGEAAANIIVVAHDISPADMLQFRESAFAGFVTDLG 180
           KADIQQVGERILK+LTGSATHLPP+GEAAANII+VAHDISPADMLQFRES FAGFVTDLG
Sbjct: 131 KADIQQVGERILKVLTGSATHLPPSGEAAANIIIVAHDISPADMLQFRESTFAGFVTDLG 190

Query: 181 GPNSHTAIVARSLAIPAAVGMHNASVLVKHDDVLIIDGDAGVVIVDPSPLVLAQYRARQE 240
           GPNSHTAIVARSLAIPAAVGMHNASVLVKHDDVLIIDGDAGVVIVDPSPLVLAQYRARQE
Sbjct: 191 GPNSHTAIVARSLAIPAAVGMHNASVLVKHDDVLIIDGDAGVVIVDPSPLVLAQYRARQE 250

Query: 241 RLLRERKKLSRLKKTPAITQDGEPITLLANIELPNDAANAFEAGAMGIGLFRSEFLFMGR 300
           RLLRERKKLSRLKKTPAITQDGEPITLLANIELP DA  AFEAGAMGIGLFRSEFLFMGR
Sbjct: 251 RLLRERKKLSRLKKTPAITQDGEPITLLANIELPGDAVTAFEAGAMGIGLFRSEFLFMGR 310

Query: 301 AGHLEKFPTEDEQFESYKQAVIAMKGRVVTIRTLDVGADKPLDEDEETALNPALGLRAIR 360
           AGHLEKFP+EDEQFE YKQAVIAMKGR VTIRTLDVGADKPLDEDEETALNPALGLRAIR
Sbjct: 311 AGHLEKFPSEDEQFEHYKQAVIAMKGRSVTIRTLDVGADKPLDEDEETALNPALGLRAIR 370

Query: 361 YCLSEPQMFLTQLRAILRASAYGPIKLLVPMMAHAFEIDQTLSMIEQAKQQLRDRKQKFD 420
           YCLSEPQMFLTQLRAILRASA+GPIKLLVPMMAHAFEIDQTL+MI+QAKQQLR+RKQKFD
Sbjct: 371 YCLSEPQMFLTQLRAILRASAFGPIKLLVPMMAHAFEIDQTLAMIDQAKQQLRERKQKFD 430

Query: 421 EDIPVGAMIEIPAAALALPLFIKRLDFLSIGTNDLIQYTLAIDRVDHEVAHLYDPLHPAV 480
           E+IPVGAMIEIPAAALALPLF+KRLDFLSIGTNDLIQYTLAIDRVDHEVAHLYDPLHPAV
Sbjct: 431 EEIPVGAMIEIPAAALALPLFVKRLDFLSIGTNDLIQYTLAIDRVDHEVAHLYDPLHPAV 490

Query: 481 LFLLSTVISQGRKAGIPVSVCGEMAGDLKWTRLLLGMGLLEFSMHPSQILSVKNEILNSD 540
           LFLLSTVISQGRKAGIPVSVCGEMAGDLKWTRLLLGMGLLEFSMHPSQILSVKNEILNSD
Sbjct: 491 LFLLSTVISQGRKAGIPVSVCGEMAGDLKWTRLLLGMGLLEFSMHPSQILSVKNEILNSD 550

Query: 541 LRLLEPQVKKVLRATEPAAISAAMAQLQALHAEPTVAEAKVAAR 584
           LRLLEPQVKKVLRATEPAAI+AAM QLQAL AEP V EAKVA R
Sbjct: 551 LRLLEPQVKKVLRATEPAAITAAMTQLQALQAEPVVTEAKVARR 594


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,735,426
Number of extensions: 70773
Number of successful extensions: 219
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 219
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 517
Effective length of database: 1,188,985
Effective search space: 614705245
Effective search space used: 614705245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)