BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0253.p
         (430 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309439|ref|YP_003773531.1| muropeptide permease of the maj...   759   0.0  

>gi|300309439|ref|YP_003773531.1| muropeptide permease of the major
           facilitator superfamily protein [Herbaspirillum
           seropedicae SmR1]
          Length = 388

 Score =  759 bits (1959), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/388 (98%), Positives = 386/388 (99%)

Query: 11  MTAPAASWQQYLNRRMLICVFLGFTSGLPLFILLSLLQAWLAKSGLNVKTLGLFALVMFP 70
           MTAPAASW QYLNRRMLICVFLGFTSGLPLFILLSLLQAWLAKSGLNVKTLGLFALVMFP
Sbjct: 1   MTAPAASWHQYLNRRMLICVFLGFTSGLPLFILLSLLQAWLAKSGLNVKTLGLFALVMFP 60

Query: 71  YTWKFVWSPLMDRFHFGRIGRRRGWMVFTQLLLFLAIGGMGMLDPLTDVSTIAFMASVVA 130
           YTWKFVWSPLMDRFHFG +GRRRGWMVFTQLLLFL+IGGMGMLDPLTDVSTIAFMASVVA
Sbjct: 61  YTWKFVWSPLMDRFHFGGMGRRRGWMVFTQLLLFLSIGGMGMLDPLTDVSTIAFMASVVA 120

Query: 131 FLSASQDIAIDAYRREILPEAELGLGSAIHVNAYKLSGMVPGALSLVLADQMPWPTVFWI 190
           FLSASQDIAIDAYRREILPEAELGLGSAIHVNAYKLSGMVPGALSLVLADQMPWPTVFWI
Sbjct: 121 FLSASQDIAIDAYRREILPEAELGLGSAIHVNAYKLSGMVPGALSLVLADQMPWPTVFWI 180

Query: 191 TAAFMLPGLLCSLVVKEPKVYGTPPKSLTEAVVLPFREFIARGGWGNALWVLGFIFLYKL 250
           TAAFMLPGLLCSL+VKEPKVYGTPPKSLTEAVVLPFREFIARGGWGNALWVLGFIFLYKL
Sbjct: 181 TAAFMLPGLLCSLLVKEPKVYGTPPKSLTEAVVLPFREFIARGGWGNALWVLGFIFLYKL 240

Query: 251 GDSMATALATKFYIDLGFSMTEIGVVSKTTSLWASVAGGIIGGIWMVRLGINRGLWVFGV 310
           GDSMATALATKFYIDLGFSMTEIGVVSKTTSLWASVAGGIIGGIWMVRLGINRGLWVFGV
Sbjct: 241 GDSMATALATKFYIDLGFSMTEIGVVSKTTSLWASVAGGIIGGIWMVRLGINRGLWVFGV 300

Query: 311 LQAVPILGFAWLAHVGASLPVLAVVIGLEAFGVGLGTTAFVAYIMRETDPRYTATQFALF 370
           LQAVPILGFAWLAHVGA+LPVLAVVIGLEAFGVGLGTTAFVAYIMRETDPRYTATQFALF
Sbjct: 301 LQAVPILGFAWLAHVGANLPVLAVVIGLEAFGVGLGTTAFVAYIMRETDPRYTATQFALF 360

Query: 371 TSLMAVPRTFVNSSVGYIVADTGWLNFF 398
           TSLMAVPRTFVNSSVGYIVADTGWLNFF
Sbjct: 361 TSLMAVPRTFVNSSVGYIVADTGWLNFF 388


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.142    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,378,577
Number of extensions: 57653
Number of successful extensions: 271
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 271
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 342
Effective length of database: 1,203,190
Effective search space: 411490980
Effective search space used: 411490980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 132 (55.5 bits)