BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0237.p
         (207 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309720|ref|YP_003773812.1| anhydro-N-acetylmuramyl-tripept...   372   e-104

>gi|300309720|ref|YP_003773812.1| anhydro-N-acetylmuramyl-tripeptide
           amidase [Herbaspirillum seropedicae SmR1]
          Length = 207

 Score =  372 bits (955), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 176/207 (85%), Positives = 188/207 (90%)

Query: 1   MDAVFSDPGAWIIDGDGWCDHARREPSPNCDERPEGVAAELLVIHNISLPPGEFGGPYIA 60
           M A  +DP AW IDG+GWC  ARREPSPNCD+RPEGV ++LLVIHNISLPPGEFGG YIA
Sbjct: 1   MTAAVTDPAAWSIDGEGWCQGARREPSPNCDDRPEGVVSQLLVIHNISLPPGEFGGSYIA 60

Query: 61  DLFCNRLDFDAHPYFDQLRPLRVSAHFLIRRDGEVVQFVPAHRRAWHAGVSSFEGRERCN 120
           DLFCNRLDFDAHPYFDQLRPLRVSAHFLIRRDGEVVQFVPAHRRAWHAGVSSFEGRERCN
Sbjct: 61  DLFCNRLDFDAHPYFDQLRPLRVSAHFLIRRDGEVVQFVPAHRRAWHAGVSSFEGRERCN 120

Query: 121 DFSIGIELEGTDFEPFTEAQYETLVQLSQALVTRYGLTAVAGHEHIAPVRKTDPGPFFDW 180
           DFSIGIELEGTDF PFT AQY+ L+ LSQALV+RYGL+AVAGHEHIAP+RKTDPGPFFDW
Sbjct: 121 DFSIGIELEGTDFTPFTPAQYDALLGLSQALVSRYGLSAVAGHEHIAPLRKTDPGPFFDW 180

Query: 181 DGYHNKMVKIVNAAQLRFPVGLHKSQA 207
             Y  +M+KIVN AQLRFP GLHKSQA
Sbjct: 181 QRYREEMMKIVNPAQLRFPSGLHKSQA 207


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.141    0.458 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 749,270
Number of extensions: 32392
Number of successful extensions: 72
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 1
Length of query: 207
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 126
Effective length of database: 1,236,335
Effective search space: 155778210
Effective search space used: 155778210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)