BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0235.p
         (270 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309718|ref|YP_003773810.1| ABC transporter permease [Herba...   464   e-132
gi|300309497|ref|YP_003773589.1| ABC transporter permease [Herba...    63   2e-11

>gi|300309718|ref|YP_003773810.1| ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 270

 Score =  464 bits (1194), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 257/270 (95%), Positives = 262/270 (97%)

Query: 1   MQTYFFILAALLYLGCAFMPSERRVPISAGIVVGWMLHGGALLSDMFAPDALRVGFAVML 60
           MQTYFFILAALLYL CAFMPS+RR+PIS GIV GW+LHGGALLSDMFAPDALRVGFAVML
Sbjct: 1   MQTYFFILAALLYLACAFMPSQRRMPISLGIVAGWVLHGGALLSDMFAPDALRVGFAVML 60

Query: 61  SSTLWISVAAYWLENRNFSLDSMRVLVLPVAAVAVVLPSAFPGNMVALAGKSDWFLAHIA 120
           SSTLWISVAAYWLENRNFSLDSMRVLVLPVAA+AVVLPS FPGNMVAL GKSDWFLAHIA
Sbjct: 61  SSTLWISVAAYWLENRNFSLDSMRVLVLPVAALAVVLPSIFPGNMVALTGKSDWFLAHIA 120

Query: 121 ISILAYSTLTIAAFHAVLMVLQESRLHTRPGPAAQSGWFGLALDRLPALLTMEKLLFRLI 180
           ISILAYSTLTIAAFHAVLMVLQESRLHTRPG A QSGWFGLALDRLPALLTMEKLLFRLI
Sbjct: 121 ISILAYSTLTIAAFHAVLMVLQESRLHTRPGLATQSGWFGLALDRLPALLTMEKLLFRLI 180

Query: 181 AFGFTLLTLTVLSGVVFSEQLFGTPFKWDHKTVFTMLSWLLFGLLLAGRRWQGWRGRTAL 240
           AFGFTLLTLTVLSGVVFSEQLFGTP KWDHKT+FTMLSWLLFGLLLAGRRWQGWRGRTAL
Sbjct: 181 AFGFTLLTLTVLSGVVFSEQLFGTPLKWDHKTIFTMLSWLLFGLLLAGRRWQGWRGRTAL 240

Query: 241 SFTLAGFAILLLAYVGSRFVLEVVLHRVLT 270
           SFTLAGFAILLLAYVGSRFVLEVVLHRVLT
Sbjct: 241 SFTLAGFAILLLAYVGSRFVLEVVLHRVLT 270


>gi|300309497|ref|YP_003773589.1| ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 384

 Score = 63.2 bits (152), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 15/152 (9%)

Query: 111 KSDWFLAHIAISILAYSTLTIAAFHAVLMVLQESRLHTRPGPAAQSGWFGLALDRLPALL 170
           +S W   H+  + + Y T  +AA  AV  +L++                G   DRLP+L 
Sbjct: 240 QSWWMKIHVPANFIGYGTFALAAMVAVAYLLRQK---------------GYLADRLPSLE 284

Query: 171 TMEKLLFRLIAFGFTLLTLTVLSGVVFSEQLFGTPFKWDHKTVFTMLSWLLFGLLLAGRR 230
            ++ ++++ IA GF   T+  + G +++ + +G  + WD K  + ++ WL +   L  R 
Sbjct: 285 VLDDVMYKAIAVGFAFFTIATILGALWAAEAWGGYWSWDPKETWALIVWLNYAAWLHMRL 344

Query: 231 WQGWRGRTALSFTLAGFAILLLAYVGSRFVLE 262
            +G RG+ A  + L G  +   A++G    L 
Sbjct: 345 MKGLRGQAAAWWALVGLLVTTFAFLGVNMFLS 376


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.331    0.141    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 736,923
Number of extensions: 25088
Number of successful extensions: 103
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 2
Length of query: 270
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 186
Effective length of database: 1,222,130
Effective search space: 227316180
Effective search space used: 227316180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 130 (54.7 bits)