BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0234.p (269 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A... 542 e-155 gi|300311841|ref|YP_003775933.1| nitrate/sulfonate/bicarbonate A... 215 3e-57 gi|300310818|ref|YP_003774910.1| nitrate/sulfonate/bicarbonate A... 211 7e-56 gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase ... 210 8e-56 gi|300309402|ref|YP_003773494.1| nitrate/sulfonate/bicarbonate A... 202 2e-53 >gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 542 bits (1397), Expect = e-155, Method: Compositional matrix adjust. Identities = 264/269 (98%), Positives = 266/269 (98%) Query: 1 MNQTNASPRIRIQNVHKVFKTDDREVVALKDIHFDIPDGQFVCLLGPSGCGKSTLLNAIA 60 MNQTNASPRIRIQ VHKVFKTDDREVVALKDI+ DIPDGQFVCLLGPSGCGKSTLLNAIA Sbjct: 1 MNQTNASPRIRIQGVHKVFKTDDREVVALKDINLDIPDGQFVCLLGPSGCGKSTLLNAIA 60 Query: 61 GFALPSSGQILTGDKVVTEPGPDRGMVFQEYALFPWMTVEQNVAFGLEIKGTPKAEIHQR 120 GFALPSSGQILT DKVV+EPGPDRGMVFQEYALFPWMTVEQNVAFGLEIKGTPKAEIHQR Sbjct: 61 GFALPSSGQILTDDKVVSEPGPDRGMVFQEYALFPWMTVEQNVAFGLEIKGTPKAEIHQR 120 Query: 121 VTQLLDKLGLIDFRTRFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQ 180 VTQLLDKLGLIDFRTRFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQ Sbjct: 121 VTQLLDKLGLIDFRTRFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQ 180 Query: 181 DELLRIWDEFRKTIVFVTHSIEEAIYLADRIVVMTYRPGTVKRDMLVNLPRLRDPADPEF 240 DELLRIWDEFRKTIVFVTHSIEEAIYLADRIVVMTYRPGTVKRDMLVNLPRLRDPADPEF Sbjct: 181 DELLRIWDEFRKTIVFVTHSIEEAIYLADRIVVMTYRPGTVKRDMLVNLPRLRDPADPEF 240 Query: 241 NALKRELGQLVMEEQQRHHNAEMKAAAVD 269 NALKRELGQLVMEEQQRHHNAEMKAAAVD Sbjct: 241 NALKRELGQLVMEEQQRHHNAEMKAAAVD 269 >gi|300311841|ref|YP_003775933.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 263 Score = 215 bits (548), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 110/220 (50%), Positives = 145/220 (65%), Gaps = 2/220 (0%) Query: 8 PRIRIQNVHKVFKTDDREVVALKDIHFDIPDGQFVCLLGPSGCGKSTLLNAIAGFALPSS 67 P + I V +KT D V A + + F++ G LLGPSGCGKSTLL AI G+ P+S Sbjct: 16 PLLEIDRVTLQYKTTDSLVTATQSVSFNVHPGDRYILLGPSGCGKSTLLKAIGGYLQPTS 75 Query: 68 GQILTGDKVVTEPGPDRGMVFQEY-ALFPWMTVEQNVAFGLEIKGTPKAEIH-QRVTQLL 125 G I + V EPGPDR MVFQE+ L PW TV QNV F L G + +R + Sbjct: 76 GAIRLKGREVHEPGPDRMMVFQEFDQLLPWKTVRQNVEFALHASGRLQGRAAAERAEYYI 135 Query: 126 DKLGLIDFRTRFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQDELLR 185 K+GL F +P LSGGM+QRV+IAR +A++ ++LMDEPF ALDALTRR +QDELLR Sbjct: 136 SKVGLAKFIDSYPHMLSGGMKQRVSIARGMAMEPDVLLMDEPFAALDALTRRKMQDELLR 195 Query: 186 IWDEFRKTIVFVTHSIEEAIYLADRIVVMTYRPGTVKRDM 225 +WD+ + T++FVTHSIEEAI + RI+++T PG V+ ++ Sbjct: 196 LWDDTQFTVLFVTHSIEEAIRVGTRILLLTPHPGQVRAEL 235 >gi|300310818|ref|YP_003774910.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 265 Score = 211 bits (536), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 120/217 (55%), Positives = 142/217 (65%), Gaps = 3/217 (1%) Query: 29 LKDIHFDIPDGQFVCLLGPSGCGKSTLLNAIAGFALPSSGQILTGDKVVTEPGPDRGMVF 88 + I DI G+FVCLLGPSGCGKSTLLNAIAGF SG+I K V PG DRG+VF Sbjct: 22 MAGIDLDIRAGEFVCLLGPSGCGKSTLLNAIAGFQ-DVSGEISVDGKRVKGPGLDRGVVF 80 Query: 89 QEY-ALFPWMTVEQNVAFGLEIKGTPKAEIHQRVTQLLDKLGLIDFRTRFPKDLSGGMRQ 147 Q ALFPW++V +NV +GL+++G AE + + +GL +FP +LSGGMRQ Sbjct: 81 QSSEALFPWLSVRENVEYGLKLRGVASAERRAAAERYVSLVGLKHAIDKFPAELSGGMRQ 140 Query: 148 RVAIARVLALDSPIMLMDEPFGALDALTRRNLQDELLRIWDEFRKTIVFVTHSIEEAIYL 207 R IARVL + ++LMDEPFGALDA TR LQ EL RIW TIVFVTH I EAI L Sbjct: 141 RAQIARVLVNEPSVVLMDEPFGALDAQTREVLQSELDRIWKSTGCTIVFVTHDIWEAILL 200 Query: 208 ADRIVVMTYRP-GTVKRDMLVNLPRLRDPADPEFNAL 243 ADR+V MT P +K V+LP RDPADP AL Sbjct: 201 ADRVVTMTAGPRAHIKTIEEVHLPHPRDPADPACMAL 237 >gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 210 bits (535), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 113/256 (44%), Positives = 160/256 (62%), Gaps = 4/256 (1%) Query: 10 IRIQNVHKVFKTDDREVV-ALKDIHFDIPDGQFVCLLGPSGCGKSTLLNAIAGFALPSSG 68 ++++N F D++ V AL + DIP+G FV LG SGCGKSTLLNA+AGF S G Sbjct: 2 LKVENASVYFSGRDKQRVHALDRVSLDIPNGGFVVALGTSGCGKSTLLNAMAGFLPLSEG 61 Query: 69 QILTGDKVVTEPGPDRGMVFQEYALFPWMTVEQNVAFGLEIKGTPKAEIHQRVTQLLDKL 128 +I + V+ PG +RG+VFQ+ +L PW +V+ NVA GL+ G K++ +R +LL + Sbjct: 62 RISLDGQPVSGPGAERGVVFQKDSLLPWKSVQDNVALGLKFAGVSKSDSRERAQELLRLV 121 Query: 129 GLIDFRTRFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQDELLRIWD 188 GL DF P +LSGGMRQRV +AR LA + I+LMDEPFGALD++TR +Q+ L+ +W Sbjct: 122 GLQDFARAAPYELSGGMRQRVGLARALAPNPKILLMDEPFGALDSMTREQMQELLVSVWA 181 Query: 189 EFRKTIVFVTHSIEEAIYLADRIVVMTYRPGTVKRDMLVNLPRLRDPADPEFNALKRELG 248 K + F+THSIEEA++L ++VM+ RPG + + R R A E A+K E Sbjct: 182 RTGKQVFFITHSIEEALFLGTEVIVMSPRPGRIVARFETDFVR-RFAAGCEARAIKTEPA 240 Query: 249 QLVMEEQQRH--HNAE 262 + E+ R H +E Sbjct: 241 FAELREEIRAIVHQSE 256 >gi|300309402|ref|YP_003773494.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 290 Score = 202 bits (514), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 104/221 (47%), Positives = 148/221 (66%), Gaps = 2/221 (0%) Query: 7 SPRIRIQNVHKVFKTDDREVVALKDIHFDIPDGQFVCLLGPSGCGKSTLLNAIAGFALPS 66 +P +++ V +++ V A ++ FD+ LLGPSGCGKS+LL ++AGF P+ Sbjct: 18 APLLQVDRVSLQYRSATAVVQATHEVSFDVYPADRFVLLGPSGCGKSSLLKSVAGFLPPA 77 Query: 67 SGQILTGDKVVTEPGPDRGMVFQEY-ALFPWMTVEQNVAFGLEIKGT-PKAEIHQRVTQL 124 +G+I +V+ +PGPDR +VFQE+ L PW TV QNV F L T K + +R Sbjct: 78 AGEIRLDGQVLHQPGPDRIVVFQEFDQLPPWKTVLQNVMFPLLASRTLGKRDAAERARHY 137 Query: 125 LDKLGLIDFRTRFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQDELL 184 LDK+GL F +P LSGGM+ RVAIAR LA+ ++LMDEPF ALDALTRR +Q+ELL Sbjct: 138 LDKVGLARFADAYPHTLSGGMKARVAIARALAMQPKMLLMDEPFAALDALTRRKMQEELL 197 Query: 185 RIWDEFRKTIVFVTHSIEEAIYLADRIVVMTYRPGTVKRDM 225 +WDE R T++FVTHSIEEA+ + +RI++++ PG V+ ++ Sbjct: 198 ALWDEVRFTLLFVTHSIEEALVVGNRILLLSPHPGRVRAEI 238 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.139 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 860,082 Number of extensions: 36700 Number of successful extensions: 503 Number of sequences better than 1.0e-08: 126 Number of HSP's gapped: 331 Number of HSP's successfully gapped: 134 Length of query: 269 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 185 Effective length of database: 1,222,130 Effective search space: 226094050 Effective search space used: 226094050 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)