BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0229.p
         (143 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309712|ref|YP_003773804.1| hypothetical protein Hsero_0371...   237   2e-64

>gi|300309712|ref|YP_003773804.1| hypothetical protein Hsero_0371
           [Herbaspirillum seropedicae SmR1]
          Length = 137

 Score =  237 bits (605), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 114/134 (85%), Positives = 126/134 (94%)

Query: 9   MPNQTATLRHQLLRSASALVIGLAALGGASHVFAAGKAGNSEYQQQIAACKSGASTEDRA 68
           MPN TATLRHQLLRSASALVIGLAALGGASHV AAGK  NS+YQQQ+AACK+G+S+EDRA
Sbjct: 1   MPNSTATLRHQLLRSASALVIGLAALGGASHVLAAGKTDNSDYQQQVAACKNGSSSEDRA 60

Query: 69  TCLREAGAAQQAAARGTLTDPGAAQLKENALRRCEGLPQSDRIDCEKRVNGQGNSDGSVA 128
           TCLREAGAA+QAA+RG LTDPGAAQLKENA++RCEGLPQSDRIDCEKRVNG+G  +GSV+
Sbjct: 61  TCLREAGAARQAASRGNLTDPGAAQLKENAMKRCEGLPQSDRIDCEKRVNGEGRVEGSVS 120

Query: 129 SGGILRETVTIVPA 142
            GGILRETVTIVPA
Sbjct: 121 EGGILRETVTIVPA 134


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.312    0.125    0.347 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 348,771
Number of extensions: 10446
Number of successful extensions: 27
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 1
Length of query: 143
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 66
Effective length of database: 1,255,275
Effective search space: 82848150
Effective search space used: 82848150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 126 (53.1 bits)