BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0215.p
         (347 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311545|ref|YP_003775637.1| Fe3+ ABC transporter periplasmi...    64   2e-11

>gi|300311545|ref|YP_003775637.1| Fe3+ ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 371

 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 150/351 (42%), Gaps = 46/351 (13%)

Query: 11  GLLLAATAAQGQAQTRTLYVGMNGGNMEKTFTQAVFAPFEQKYNVKIAVVPGGSADILAK 70
           G+L +A A    A T T+Y  +    ++    QA F   +   +++I  V   +  + AK
Sbjct: 45  GMLFSAQA--HAATTLTVYTALEADQIKAY--QAAF--HKANPDIEIKWVRDSTGIVTAK 98

Query: 71  AQAAKDKPQMHLMF---------LD-DGVMYRAVGMGLCEKQKPNPNLANLLPVAHIKDD 120
             A K  PQ  +++         LD +G++      GL        + AN  P A +   
Sbjct: 99  LLAEKANPQADVIWGLAATSLALLDKEGMLMPYAPQGLSAIDAKYRSAAN--PPAWV--- 153

Query: 121 LATGVTISVTGLAYNTKVYAEKGWAPPTSWLDLADPKLKGRVVFQSLPSSTFGLHAFLAF 180
              G+ +  + + +NT    ++G   PTSW DL  P   G++V  +  SS  G     A+
Sbjct: 154 ---GMDVWASAICFNTVEAQKQGLPKPTSWADLTKPVYAGKIVMPNPASSGTGYLDVSAW 210

Query: 181 NQLKGGTDANVDPGFKAWPSTIGPNVLEYISNSAKISEMAQTGEAAL---FPYTPTQSTL 237
            Q+ G      D G+ A+   +  N+ +Y  + +K  + A TGE  +   F Y   ++  
Sbjct: 211 LQMMGE-----DKGW-AYMDALHKNIGQYTHSGSKPCKQAATGEFPIGIAFEYRAVKT-- 262

Query: 238 LKSKGVPVEYVQPKEGAIVLMVAQCVIANNTEPQLAQELAAYLLSPQAQALALENGNYNP 297
            K +G P++ + P EG    + A  ++  +   + A++LA +  S +A AL      Y  
Sbjct: 263 -KKEGAPIDVILPSEGLGWDIEATAIVKGSKHLEAAKKLADFSASKEAMAL------YEK 315

Query: 298 TNTKVQVSGTAAAEQARMNGFVKAARAVD--WDEINKNRAVWNTRWSRTIE 346
               V + G A  ++     + K     D  W   N++R +  T WS+  E
Sbjct: 316 NFAVVAIPGVAKPDELLSADYEKRLIKNDFTWASTNRDRIL--TEWSKRYE 364


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.129    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,022,887
Number of extensions: 41364
Number of successful extensions: 112
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 261
Effective length of database: 1,212,660
Effective search space: 316504260
Effective search space used: 316504260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)