BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0209.p (267 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310412|ref|YP_003774504.1| spermidine/putrescine ABC trans... 114 8e-27 gi|300309934|ref|YP_003774026.1| sulfate ABC transporter permeas... 74 2e-14 gi|300313815|ref|YP_003777907.1| Fe3+ ABC transporter permease [... 70 2e-13 gi|300309782|ref|YP_003773874.1| sugar ABC transporter permease ... 67 2e-12 gi|300312150|ref|YP_003776242.1| molybdate ABC transporter perme... 65 6e-12 >gi|300310412|ref|YP_003774504.1| spermidine/putrescine ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 427 Score = 114 bits (285), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 60/177 (33%), Positives = 109/177 (61%), Gaps = 2/177 (1%) Query: 84 YYGIFWRTLWISGLVTLICIVVGAPEAWILNRMRKPWRSIMLLVVLAPLMISVVVRAFGW 143 Y IF RTLW+S +VT I +++ P A+ L+ M + ++++++VL P S++VR W Sbjct: 206 YRTIFGRTLWMSAVVTCITLLLAYPLAYWLSTMPERRANLLMILVLIPFWTSILVRVAAW 265 Query: 144 SMLLGPEGLINGTLVALGFAK--VKLLYTETAIVIALVHVMLPFMVIPVWTSLQKLDGGV 201 +LL EGL+N L+ G + ++L++ + I++ H++LPFM++P+++ ++ + Sbjct: 266 IVLLQSEGLVNKALMLAGLTQSPLELVFNRVGVYISMTHILLPFMILPLYSVMKSVPATY 325 Query: 202 ANAALSLGASPITVLRRIVLPQIMPGILSGSLIVFGLSASSFAIPGLLGGRRLKMMA 258 AA+SLG+ P R+ +PQ PGI +G L+VF ++ + P LLGG +M++ Sbjct: 326 LKAAVSLGSHPFAAFWRVYVPQTYPGIGAGVLLVFIMAGGYYITPALLGGPNEQMVS 382 >gi|300309934|ref|YP_003774026.1| sulfate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 291 Score = 73.6 bits (179), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 84/169 (49%) Query: 75 YTAVLTDPYYYGIFWRTLWISGLVTLICIVVGAPEAWILNRMRKPWRSIMLLVVLAPLMI 134 Y +VLT+ +Y+ TL +S VT + + L R R P ++++L ++ PL Sbjct: 63 YLSVLTNRHYFASLVSTLALSAAVTAATLAISVFVGLFLQRHRFPGQALLLAMLTFPLAF 122 Query: 135 SVVVRAFGWSMLLGPEGLINGTLVALGFAKVKLLYTETAIVIALVHVMLPFMVIPVWTSL 194 VV F ML G +GLI L + Y+ + + ++ +P +++ V + Sbjct: 123 PGVVVGFMVIMLAGRQGLIGALTNGLFGESLVFAYSLAGLFLGYLYFSIPRVILTVVAAA 182 Query: 195 QKLDGGVANAALSLGASPITVLRRIVLPQIMPGILSGSLIVFGLSASSF 243 +KLD + AA SLGA P VL +VLP ++P ++S I F S +F Sbjct: 183 EKLDPSLEEAARSLGARPWQVLLHVVLPALLPALVSSGAICFATSVGAF 231 >gi|300313815|ref|YP_003777907.1| Fe3+ ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 603 Score = 70.1 bits (170), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/221 (29%), Positives = 104/221 (47%), Gaps = 11/221 (4%) Query: 37 ILLCTVMLLVPLVLTFVLSFNAYDAETGPKAGTFTLEHYTAVLTDPYYYGIFWRTLWISG 96 +LL + + VPL+L F SF A T + Y + DP + F L ++ Sbjct: 29 VLLAALAIFVPLLLIFYQSF--LSAPFFAPVKELTFDSYRFIFDDPDFRQAFVNGLTLAT 86 Query: 97 LVTLICIVVGAPEAWILNRMRKPWRSIMLLVVLAPLMISVVVRAFGWSMLLGPEGL---- 152 + LI + +G A+++ R P RS + ++ P+ +S +V FG+ + +GP G Sbjct: 87 GLALIAVPLGGMLAFLMVRTDLPGRSFIAPALMVPIFVSPMVIGFGYVVSMGPVGFYTVW 146 Query: 153 INGTLVALGFAKVKL-LYTETAIVI--ALVHVMLPFMVIPVWTSLQKLDGGVANAALSLG 209 + L GF +Y+ T+IVI L HV P + + +L+ L V AA G Sbjct: 147 VKNLLSVFGFEGDPWNIYSFTSIVIIAGLTHV--PHVYLYASAALRSLGSDVEEAARVAG 204 Query: 210 ASPITVLRRIVLPQIMPGILSGSLIVFGLSASSFAIPGLLG 250 ASP+ V + LP IMP + ++VF L F + +LG Sbjct: 205 ASPLQVALNVSLPMIMPALAYSGVLVFFLGFEVFGLVLVLG 245 >gi|300309782|ref|YP_003773874.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 324 Score = 66.6 bits (161), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 97/202 (48%), Gaps = 5/202 (2%) Query: 31 LMSAPAILLCTVMLLVPLVLTFVLSFNAYDAETGPKAGTFTLEHYTAVLTDPYYYGIFWR 90 LM P++L+ ++VPL +T S N Y+ + G LE+Y +L DP ++ Sbjct: 42 LMQTPSVLILLAWMIVPLAMTIYFSVNRYNLMAPDQTGFVGLENYAFLLQDPAFWPSIGN 101 Query: 91 TLWISGLVTLICIVVGAPEAWILNRMRKPWRSIMLLVVLAPLMISVVVRAFGW-SMLLGP 149 T + G V I ++ G A + ++ + R I L+V+ P + V A W +M++ P Sbjct: 102 TALLIGSVLAISVIGGTLLAVLFDQPFRG-RGIARLLVIGPFFVMPTVAALIWKNMIMHP 160 Query: 150 -EGLINGTLVALGFAKVKLL--YTETAIVIALVHVMLPFMVIPVWTSLQKLDGGVANAAL 206 G++ + LG + L Y +++I + +PF + + T+LQ LD AA Sbjct: 161 VYGILAYVMRHLGLEPIDWLAEYPMLSVIIIVAWQWIPFAFLILLTALQSLDTDQKEAAQ 220 Query: 207 SLGASPITVLRRIVLPQIMPGI 228 GA P+ + IVLP + I Sbjct: 221 LDGAGPVRIFFYIVLPHLKRAI 242 >gi|300312150|ref|YP_003776242.1| molybdate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 250 Score = 65.1 bits (157), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 48/177 (27%), Positives = 92/177 (51%), Gaps = 5/177 (2%) Query: 91 TLWISGLVTLICIVVGAPEAWILNRMRKPWRSIMLLVVLAPLMISVVVRAFGWSMLLGPE 150 TL ++ +VT++ +++G P AW L R R WR + VV PL++ V F +L+GP+ Sbjct: 14 TLSLASIVTVLLLLLGTPLAWWLARTRSGWRHGVAAVVALPLVLPPAVLGFYLLVLMGPQ 73 Query: 151 GLINGTLVALGFAKVKLLYTETAIVIALVHVMLPFMVIPVWTSLQKLDGGVANAALSLGA 210 G + ALG L ++ +V+A + +PF+V P+ + + + A +L A Sbjct: 74 GPVGQLTQALGLG--LLPFSFGGLVLASLLYSMPFVVQPLQNAFEAVGERPMEVAATLRA 131 Query: 211 SPITVLRRIVLPQIMPGILSGSLIVFGLSASSFAIPGLLGGR---RLKMMATNIHGH 264 SP+ + +P PG L+ +++ F + F + ++GG + ++++ I+ H Sbjct: 132 SPLDAFFTVAVPLAGPGFLTAAVLGFAHTVGEFGVVLMIGGNIPGKTRVLSMQIYDH 188 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.326 0.139 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 832,496 Number of extensions: 34521 Number of successful extensions: 249 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 242 Number of HSP's successfully gapped: 15 Length of query: 267 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 183 Effective length of database: 1,222,130 Effective search space: 223649790 Effective search space used: 223649790 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 130 (54.7 bits)