BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0208.p (361 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310414|ref|YP_003774506.1| spermidine/putrescine ABC trans... 261 5e-71 gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC trans... 256 2e-69 gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [H... 255 4e-69 gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [H... 253 2e-68 gi|300311547|ref|YP_003775639.1| ABC transporter ATPase [Herbasp... 248 7e-67 >gi|300310414|ref|YP_003774506.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 376 Score = 261 bits (668), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 133/297 (44%), Positives = 185/297 (62%), Gaps = 5/297 (1%) Query: 3 FLTLTNVSKFY-GDTQAVSGFNLTVEKGEFISLLGPSGCGKTTTLQMIAGFEAVSGGRIE 61 + V K Y G+ V +L + +GEF++LLGPSG GKTT L M+AGFE +GG I Sbjct: 21 LVQFCGVKKTYDGENLIVKNLDLDIRRGEFLTLLGPSGSGKTTCLMMLAGFEFPTGGEIR 80 Query: 62 LDGRDITHAKPNTRGLGIVFQTYALFPHMTVEQNVAFGLEMRKCGAAEKRDRVAQALSLV 121 LDG+ + P+ R +G+VFQ YALFPHMT+ QNVA+ L +RK A + +V QAL +V Sbjct: 81 LDGQLLNRVPPHKRNIGMVFQNYALFPHMTIAQNVAYPLSVRKMDRATREAKVKQALDMV 140 Query: 122 HLEKHGARYPRELSGGQRQRVALARALVIAPPVLLLDEPLSNLDAKLREEMQFELRDIQR 181 + K G RYP +LSGGQ+QRVALAR LV P ++L+DEPL LD +LRE MQ EL+ + + Sbjct: 141 QMGKFGDRYPTQLSGGQQQRVALARTLVFDPQLVLMDEPLGALDKQLREHMQLELKALHK 200 Query: 182 KVGTTTIMVTHDQSEAMSISDRVVVMEAGHITQVGRPLNVYEHPANRFISTFVGKANLLE 241 ++G T + VTHDQSEA+++SDRV V + G I Q+ +YE+P N+F++ F+G N + Sbjct: 201 RLGVTFVYVTHDQSEALTMSDRVAVFDQGVIQQLAPVTELYEYPDNQFVANFIGDNNRFK 260 Query: 242 GQVVGAAGERADIAV--GGMMLSLESTDSGLRGGGRVVLGLRPEKIRCTAPGQGRCN 296 G V GE + + G + L + G + +RPE+IR A G N Sbjct: 261 GSVESVQGEHCTVRLTDGAALTGLNVHRA--HAGQSITACVRPERIRLAAGGSAEPN 315 >gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 256 bits (654), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 140/316 (44%), Positives = 198/316 (62%), Gaps = 13/316 (4%) Query: 4 LTLTNVSK-FYGDTQAVSGFNLTVEKGEFISLLGPSGCGKTTTLQMIAGFE-AVSGGRIE 61 + L+ +K F T+A+ +L + GE + LLGPSGCGKTTTL+MIAG E GGR+ Sbjct: 10 IRLSQCAKSFANGTRALQPLDLQIHPGETLVLLGPSGCGKTTTLRMIAGLEFPDEGGRVL 69 Query: 62 LDGRDITHAKPNTRGLGIVFQTYALFPHMTVEQNVAFGLEMRKCGAAEKRDRVAQALSLV 121 D+T RG+G+VFQ YALFP+M+V +N+A+G+++RK A E+ +RV + L +V Sbjct: 70 FGEEDVTMLPIEKRGVGMVFQNYALFPNMSVGENIAYGMKIRKIAAGERAERVERLLEMV 129 Query: 122 HLEKHGARYPRELSGGQRQRVALARALVIAPPVLLLDEPLSNLDAKLREEMQFELRDIQR 181 HL+ R +LSGGQ+QRVALARAL + P VLLLDEPL+ LDAKLRE ++ +L + R Sbjct: 130 HLQGLSHRRVDQLSGGQKQRVALARALAMEPRVLLLDEPLTALDAKLREAVRSDLNKLLR 189 Query: 182 KVGTTTIMVTHDQSEAMSISDRVVVMEAGHITQVGRPLNVYEHPANRFISTFVGKANLLE 241 +G T I VTHDQ EAM++ DR+VVME G I+Q+G P +Y HPAN F++ F+G N ++ Sbjct: 190 SLGITAIYVTHDQGEAMALGDRIVVMERGKISQIGTPQEIYYHPANDFVAEFIGAMNRVD 249 Query: 242 GQVVGAAGERADIAVGGMMLSLESTDSGLRGGGRVVLGLRPEKIRC--TAPGQGRC-NGE 298 G V AG+R + G + L ++ G RPE + C G+ Sbjct: 250 GIV---AGDRLQLPTGTLPLPPDAV-----AGQPAQALFRPEDVEVIDITEADAHCLRGK 301 Query: 299 VVRRFFLGSQWMYEVE 314 ++ FFLG + +E+E Sbjct: 302 LINTFFLGDRTRFEIE 317 >gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 372 Score = 255 bits (651), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 129/303 (42%), Positives = 187/303 (61%), Gaps = 6/303 (1%) Query: 1 MSFLTLTNVSKFYGDTQAVSGFNLTVEKGEFISLLGPSGCGKTTTLQMIAGFEAVSGGRI 60 M+ +++ N++K Y D + + NL +E GEF+ +GPSGCGK+T L+MIAG E +S G + Sbjct: 1 MAAVSIRNLAKRYDDNEVMRDINLEIEDGEFVVFVGPSGCGKSTLLRMIAGLEEISDGDL 60 Query: 61 ELDGRDITHAKPNTRGLGIVFQTYALFPHMTVEQNVAFGLEMRKCGAAEKRDRVAQALSL 120 ++ R + + RG+ +VFQ+YAL+PHM++ N+AFGL++ AE V A + Sbjct: 61 DIGARRMNEVPASKRGVAMVFQSYALYPHMSLYDNMAFGLKIAGKSKAEIDAAVQHAAKI 120 Query: 121 VHLEKHGARYPRELSGGQRQRVALARALVIAPPVLLLDEPLSNLDAKLREEMQFELRDIQ 180 +H++ R PR LSGGQRQRVA+ RA+ P V L DEPLSNLDA LR +M+ E + Sbjct: 121 LHIDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEFAKLH 180 Query: 181 RKVGTTTIMVTHDQSEAMSISDRVVVMEAGHITQVGRPLNVYEHPANRFISTFVG--KAN 238 + TT I VTHDQ EAM+++D++VV+ G I QVG P +Y HPANRF++ F+G K N Sbjct: 181 DDLKTTMIYVTHDQIEAMTLADKIVVLSEGRIEQVGSPQQLYHHPANRFVAGFIGSPKMN 240 Query: 239 LLEGQVVGAAGERADIAVGGMMLSLESTD-SGLRGGGRVVLGLRPEKIRCT---APGQGR 294 ++G V + + + G L + D S L+ G +V LG+RPE + A Q R Sbjct: 241 FIDGTVAAIQADGVQVQLPGGGLQWAAVDGSTLQVGQKVTLGVRPEHLNIAQGQAALQAR 300 Query: 295 CNG 297 C Sbjct: 301 CTA 303 >gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 253 bits (645), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 132/311 (42%), Positives = 194/311 (62%), Gaps = 19/311 (6%) Query: 1 MSFLTLTNVSKFYGDTQAVSGFNLTVEKGEFISLLGPSGCGKTTTLQMIAGFEAVSGGRI 60 M+ + + V K +G TQ + G ++ + GEF L+GPSGCGK+T L+M+AG E ++GG I Sbjct: 1 MASVQIRAVKKQFGSTQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGEI 60 Query: 61 ELDGRDITHAKPNTRGLGIVFQTYALFPHMTVEQNVAFGLEMRKCGAAEKRDRVAQALSL 120 + G + + +P R + +VFQ YAL+PHMTV N+AF L + K A +RV +A + Sbjct: 61 LIGGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDKAFVDERVKKAADI 120 Query: 121 VHLEKHGARYPRELSGGQRQRVALARALVIAPPVLLLDEPLSNLDAKLREEMQFELRDIQ 180 + L + RYPR+LSGGQRQRVA+ RA+V P V L DEPLSNLDAKLR +M+ E++++ Sbjct: 121 LGLNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEIKELH 180 Query: 181 RKVGTTTIMVTHDQSEAMSISDRVVVMEAGHITQVGRPLNVYEHPANRFISTFVG----- 235 +++ TT+I VTHDQ EAM+++D++VVM G + Q GRPL++Y++PAN F++ F+G Sbjct: 181 QRLKTTSIYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLDLYDYPANLFVAGFIGSPAMN 240 Query: 236 ------KANLLEGQVVGAAGERADIAVGGMMLSLESTDSGLRGGGRVVLGLRPEKIRCTA 289 + N +V A G R G +L+ D G +V G+RPE + A Sbjct: 241 FIPATLRRNATGAEVEFADGTRVPAPYGA---ALQGND-----GQKVTYGVRPEHLSIGA 292 Query: 290 PGQGRCNGEVV 300 GQG +V Sbjct: 293 AGQGIATKVIV 303 >gi|300311547|ref|YP_003775639.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 359 Score = 248 bits (632), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 140/309 (45%), Positives = 197/309 (63%), Gaps = 11/309 (3%) Query: 3 FLTLTNVSKFYGDTQAVSGFNLTVEKGEFISLLGPSGCGKTTTLQMIAGFEAVSGGRIEL 62 FL++ V K +G A+ +L V +GE + LLGPSGCGKTT L+ IAG E GR+ Sbjct: 12 FLSVREVEKRFGSFTALDRVSLEVRRGEMVCLLGPSGCGKTTLLRTIAGLERQDSGRLHA 71 Query: 63 DGRDITHAKPNTRGLGIVFQTYALFPHMTVEQNVAFGLEMRKCGAAEKRDRVAQALSLVH 122 DGRDI+ P R GI+FQ+YALFP+++V NVA+GL + +KR+RV + LS+V Sbjct: 72 DGRDISQLPPQARDYGILFQSYALFPNLSVADNVAYGLG--RMSRQQKRERVTEMLSMVG 129 Query: 123 LEKHGARYPRELSGGQRQRVALARALVIAPPVLLLDEPLSNLDAKLREEMQFELRDIQRK 182 L+ +YP +LSGGQ+QRVALARAL +P +LLLDEPLS LDA++RE +Q E+R +Q++ Sbjct: 130 LDGSQDKYPGQLSGGQQQRVALARALAPSPSLLLLDEPLSALDAQVREHLQLEIRRLQKQ 189 Query: 183 VGTTTIMVTHDQSEAMSISDRVVVMEAGHITQVGRPLNVYEHPANRFISTFVGKANLLEG 242 TT+MVTHDQ EAM ++DR+ VM+ G I Q G P +Y PA F++ F+G+AN L Sbjct: 190 FRITTLMVTHDQEEAMVMADRIAVMQHGRIEQFGTPEQIYRRPATPFVADFIGQANWLPF 249 Query: 243 QVVGAAGERADIAVGGMMLSLESTDSGLRGGGRVVLGLRPEKIRCTAPGQ--GRCNGEVV 300 + + +AVGG+ L ++ +S R GR L RPE ++ + R VV Sbjct: 250 TRLSG----SQVAVGGLHLEIQPDESD-RASGR--LFCRPEAVQLFSDESCANRFLARVV 302 Query: 301 RRFFLGSQW 309 R +LG ++ Sbjct: 303 DRIYLGDRY 311 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.135 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,069,302 Number of extensions: 42991 Number of successful extensions: 586 Number of sequences better than 1.0e-08: 131 Number of HSP's gapped: 347 Number of HSP's successfully gapped: 147 Length of query: 361 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 275 Effective length of database: 1,212,660 Effective search space: 333481500 Effective search space used: 333481500 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)