BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0207.p (285 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309916|ref|YP_003774008.1| transcription regulator protein... 77 2e-15 gi|300313063|ref|YP_003777155.1| transcription regulator protein... 60 2e-10 gi|300310974|ref|YP_003775066.1| transcription regulator protein... 59 3e-10 gi|300313290|ref|YP_003777382.1| IclR family transcription regul... 57 2e-09 >gi|300309916|ref|YP_003774008.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 265 Score = 76.6 bits (187), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 70/234 (29%), Positives = 112/234 (47%), Gaps = 9/234 (3%) Query: 34 DAPPQGMRVTQVAKAIGLTQGTTHRLLQSLAGEGVVEQDERSKLYRLGMDLFALAARAGN 93 DAP + + Q+A G + T +R+L +L EG+V ++ R+K Y +G L LA+RA + Sbjct: 34 DAP---LNIAQLAALSGYPRPTVYRILAALMAEGMVVENPRNKQYEVGPRLINLASRAWD 90 Query: 94 ASDVRSLCRPALLRLCGSLGDTVFLLLRSRFDAVCVDRVDGPFPIRAFTGDIGGRVALGV 153 SD+R+ +L +L +TV L + S V +++++ P +R IG RV L Sbjct: 91 RSDIRTTAIESLRQLRDLTRETVHLAVPSDHSMVYIEKLESPQAVR-MDSRIGTRVTLYS 149 Query: 154 GQGALAILAFLPEEEREEVIRYNVPRLREF--GVYDEV-YLRTEIERVRETGYAARQAGL 210 A LA L E RE ++R L+ F + E+ LR ++E R GYA + Sbjct: 150 SSVGKAYLAGLEEAHRERLMR--TLHLQAFTANTHTELAALRADVEDTRARGYAEDREEN 207 Query: 211 LDGMAGLGVPLFDAGGNIVGALSVGTLTSRLTEERLPTVVQMLQREAAALSRRI 264 + G + A G V +SV R + VQ L + A +SR++ Sbjct: 208 EAQIFCYGAAIVGADGVPVACVSVSIPLYRRLPDAQQAYVQPLLQACATISRKL 261 >gi|300313063|ref|YP_003777155.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 273 Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/249 (23%), Positives = 115/249 (46%), Gaps = 16/249 (6%) Query: 19 VNGIQRTFAVLRALADAPPQGMRVTQVAKAIGLTQGTTHRLLQSLAGEGVVEQDERS--- 75 + G+++ +L A D Q M QVA GL++ R L +L G + + ++ Sbjct: 30 IAGLEKGLLILEAF-DFDNQRMTSAQVAARTGLSRTAARRYLLTLEHLGYLHSEGKTFAL 88 Query: 76 --KLYRLGMDLFALAARAGNASDVRSLCRPALLRLCGSLGDTVFLLLRSRFDAVCVDRVD 133 ++ ++G F +++ + + +P L ++ G G+ V+ + +D V + R + Sbjct: 89 TPRVLKVGWSYF-------DSAPLPRILQPFLQQITGQTGEAVYASVLDGWDLVFIAR-N 140 Query: 134 GPFPIRAFTGDIGGRVALGVGQGALAILAFLPEEE-REEVIRYNVPRLREFGVYDEVYLR 192 G + +G RV + + +L+ LPE++ R+ + + + D L Sbjct: 141 GATRVMTTGFVLGARVPAQLASPGIVMLSALPEQQVRDWLATCAMTPFTPHTITDPDQLY 200 Query: 193 TEIERVRETGYAARQAGLLDGMAGLGVPLFDAGGNIVGALSVGT-LTSRLTEERLPTVVQ 251 I + R+ GYA + L G+ G+ VPL + ++GALS+ + + E+ L ++ Sbjct: 201 ALIAQARQLGYAVVEQQLQTGVRGIAVPLKNRHAKVIGALSLSLPMAAEAREQTLARILP 260 Query: 252 MLQREAAAL 260 LQ+ A AL Sbjct: 261 ALQQAANAL 269 >gi|300310974|ref|YP_003775066.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 261 Score = 59.3 bits (142), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 73/263 (27%), Positives = 111/263 (42%), Gaps = 19/263 (7%) Query: 10 AASAPASLPVNGIQRTFAVLRALADAPPQGMRVTQVAKAIGLTQGTTHRLLQSLAGEGVV 69 A + + I+R ++L ALA A P + + +++ A L T HR+L L + V Sbjct: 5 AGETEQHISIQVIERMVSLLDALA-AYPDPVSLKELSAATDLHPSTAHRILNDLVVKRFV 63 Query: 70 EQDERSKLYRLGMDLFALAARAGNASDVRSLCRPALLRLCGSLG----DTVFLLLRSRFD 125 ++ E YRLGM L L GN R R A L +L T+ L +R + Sbjct: 64 DRVEPGT-YRLGMRLLEL----GNIVKSRLSVREAALDFMRALHRKTHQTINLSVRQADE 118 Query: 126 AVCVDRV----DGPFPIRAFTGDIGGRVALGV-GQGALAILAFLPEEEREEVIRYNVPRL 180 V +DR G +RA IGGR L + G L + P+ R R + Sbjct: 119 IVYIDRSFSERSGMQVVRA----IGGRAPLHLTSTGKLFLSVDDPKNVRAYATRTGLAGH 174 Query: 181 REFGVYDEVYLRTEIERVRETGYAARQAGLLDGMAGLGVPLFDAGGNIVGALSVGTLTSR 240 + + D L E+ VR GYA L G+ + + D G +V LS+ R Sbjct: 175 NKNSITDLAKLERELSMVRALGYARDNEELELGVRCMAAGICDDSGKLVAGLSISAPADR 234 Query: 241 LTEERLPTVVQMLQREAAALSRR 263 L +E + +V + ++AL R Sbjct: 235 LQDEWVEDLVSTASQISSALGYR 257 >gi|300313290|ref|YP_003777382.1| IclR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 260 Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/239 (23%), Positives = 110/239 (46%), Gaps = 10/239 (4%) Query: 19 VNGIQRTFAVLRALADAPPQGMRVTQVAKAIGLTQGTTHRLLQSLAGEGVVEQDERSKLY 78 + + R AV+RA +D+ + + + Q+++ G+ + R L +L G + D + + Sbjct: 16 MTSLARGLAVIRAFSDSR-RSLTIAQISQKTGIPRAAVRRCLHTLKQLGYADSDVNN--F 72 Query: 79 RLGMDLFALAARAGNASDVRSLCRPALLRLCGSLGDTVFLLLRSRFDAVCVDRVDGPFPI 138 L + L +++ + +P L + +LG++ L + + + V R + Sbjct: 73 SLRPKILTLGYSYLSSTPLTVSAQPYLNNISRTLGESCSLAVLDDHEVLYVAR-SAASRV 131 Query: 139 RAFTGDIGGRVALGVGQGALAILAFLPEEEREEVI-RYNVPRLREFGVYDEVYLRTEIER 197 + + G R+ A+LA LPE++ + + + L E V + LR + Sbjct: 132 MSVALNTGSRLPAYCTSLGRAMLAHLPEDQLKAYFDKVKLRALTEKTVVSQKRLRDILAG 191 Query: 198 VRETGYAARQAGLLDGMAGLGVPLFDAGGNIVGALSVGTLTSRLT-----EERLPTVVQ 251 VR GYA L G+ + VP+ A GN++ AL+VG +R++ EE LP +++ Sbjct: 192 VRANGYAVIDEELEVGLRSIAVPVRGASGNVLAALNVGAQAARVSVAQMEEEILPVLLR 250 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.138 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 960,625 Number of extensions: 43280 Number of successful extensions: 191 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 192 Number of HSP's successfully gapped: 7 Length of query: 285 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 201 Effective length of database: 1,222,130 Effective search space: 245648130 Effective search space used: 245648130 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)