BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0203.p
         (243 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309698|ref|YP_003773790.1| type II secretion system protei...   328   2e-91

>gi|300309698|ref|YP_003773790.1| type II secretion system protein
           [Herbaspirillum seropedicae SmR1]
          Length = 415

 Score =  328 bits (841), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 200/244 (81%), Positives = 213/244 (87%), Gaps = 2/244 (0%)

Query: 1   LRGKVRAALAYPCAVVLVAIIVTVVIMLWVVPAFEQMFQQFGAELPLPTRIVMATARLLG 60
           LRGKVRAALAYPCAVVLVA+ VTVVIMLWVVPAFEQMF+ FGAELPLPTRIVM+ A  L 
Sbjct: 173 LRGKVRAALAYPCAVVLVAVAVTVVIMLWVVPAFEQMFRHFGAELPLPTRIVMSLAHALT 232

Query: 61  QHGPWLLLGTLMTGVLATL-AWRRYLPLRLAAQRLSLSLPLFGKLLRQAALARWSRTFGT 119
           Q  PWLL G L   VLA L AWRR+LPL   AQRLSL LPL G LLRQAALARWSRTFGT
Sbjct: 233 QAWPWLLPG-LAIAVLAGLQAWRRWLPLGQHAQRLSLRLPLLGGLLRQAALARWSRTFGT 291

Query: 120 LFGAGIALVEALETVSGAAGNVVYADASLAVRDAVRNGASLHAAMQATGVFPDLAVQMTA 179
           L GAGIALV+ALETV+GAAGNVV   ASLAVRDAVRNGASLHAAMQATGVFPDLAVQMTA
Sbjct: 292 LLGAGIALVQALETVAGAAGNVVIGQASLAVRDAVRNGASLHAAMQATGVFPDLAVQMTA 351

Query: 180 VGEEAGALDAMLGRIADLNEREVDEAVTALTSLMEPVIMAVLGVVIGGLVVAMYLPVFRM 239
           VGEE G LDAML +IA+LNEREVD+ VTALTSLMEP IM VLG+VIGGLV+A+YLPVFRM
Sbjct: 352 VGEETGTLDAMLIKIAELNEREVDDTVTALTSLMEPAIMTVLGLVIGGLVIALYLPVFRM 411

Query: 240 GAVV 243
           G+VV
Sbjct: 412 GSVV 415


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.138    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 604,344
Number of extensions: 20939
Number of successful extensions: 147
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 2
Length of query: 243
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 160
Effective length of database: 1,226,865
Effective search space: 196298400
Effective search space used: 196298400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 129 (54.3 bits)