BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0188.p
         (268 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309683|ref|YP_003773775.1| cell division GTPase [Herbaspir...   525   e-150

>gi|300309683|ref|YP_003773775.1| cell division GTPase
           [Herbaspirillum seropedicae SmR1]
          Length = 395

 Score =  525 bits (1353), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 260/268 (97%), Positives = 263/268 (98%), Gaps = 1/268 (0%)

Query: 1   VVSKPFSYEGQKCMDIADAGLEELTQHVDSLIIILNEKLEEIYEDDSMIEWLSHADDVLN 60
           VVSKPFSYEGQKCMDIADAGLEEL+QHVDSLIIILNEKLEEIYEDDSMIEWLSHADDVLN
Sbjct: 129 VVSKPFSYEGQKCMDIADAGLEELSQHVDSLIIILNEKLEEIYEDDSMIEWLSHADDVLN 188

Query: 61  NAVAGIAEIINVPGHINVDFNDVKTIMGEQGKAMMGTATAAGVDRARVAAEQAVASPLLD 120
           NAVAGIAEIINVPGHINVDFNDVKTIMGEQGKAMMGTATA+GVDRARVAAEQAVASPLLD
Sbjct: 189 NAVAGIAEIINVPGHINVDFNDVKTIMGEQGKAMMGTATASGVDRARVAAEQAVASPLLD 248

Query: 121 GIDLSGARGVLVNVTASRGLKGKEIKEVMATVRAFAAPDASIAQGIAYDDSMGDEIRVTV 180
           GIDLSGARGVLVNVTASR LKGKEIKEVMATVRAFAAPDASIAQGIAYDDSMGDEIRVTV
Sbjct: 249 GIDLSGARGVLVNVTASRSLKGKEIKEVMATVRAFAAPDASIAQGIAYDDSMGDEIRVTV 308

Query: 181 VATGLGRARKAVQLVQTPVMRTGTHNEPMMAVGGVMPQGGAQAGGATFGGLKAPAVWRRE 240
           VATGLGRARKAVQLVQTPVMRTGTHNEP+MAVGG MPQGGAQA  A FGGLKAPAVWRRE
Sbjct: 309 VATGLGRARKAVQLVQTPVMRTGTHNEPIMAVGGAMPQGGAQAAPA-FGGLKAPAVWRRE 367

Query: 241 SASDTVRALEKNGMETYDIPAFLRKQAD 268
           SASDTVRALEKNGMETYDIPAFLRKQAD
Sbjct: 368 SASDTVRALEKNGMETYDIPAFLRKQAD 395


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.132    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 677,778
Number of extensions: 21633
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 184
Effective length of database: 1,222,130
Effective search space: 224871920
Effective search space used: 224871920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)