BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0183.p
         (416 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309677|ref|YP_003773769.1| rod shape-determining (RodA pro...   731   0.0  
gi|300313948|ref|YP_003778040.1| rod shape-determining (RodA pro...   113   2e-26

>gi|300309677|ref|YP_003773769.1| rod shape-determining (RodA
           protein) transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 421

 Score =  731 bits (1888), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/421 (96%), Positives = 410/421 (97%), Gaps = 5/421 (1%)

Query: 1   MKLGLSSVRSWLGGLKEAAPIS-----XGRGSASGSIGFEQRSRMMEYDQPLIWVVLLLM 55
           MKL LSS+RSWLGGL+EAAP +      GRG ASGSIGFEQRSRMMEYDQPLIWVVLLLM
Sbjct: 1   MKLNLSSMRSWLGGLREAAPAAAGRARSGRGGASGSIGFEQRSRMMEYDQPLIWVVLLLM 60

Query: 56  LFGMVMVYSASVALPDSPKYASYSNYHFLIRQAIFIVLSIIAGALAFRVRMETWQKWAPY 115
           LFGMVMVYSASVALPDSPKYASYSNYHFLIRQAIFIVLSIIAGALAFRVR+ETWQKWAPY
Sbjct: 61  LFGMVMVYSASVALPDSPKYASYSNYHFLIRQAIFIVLSIIAGALAFRVRIETWQKWAPY 120

Query: 116 LFAITLILLLMVLIPGVGKGVNGAKRWLSLKIINLQPSELMKLFIVLYAADYTVRKQAVM 175
           LF ITLILLLMVL+PGVGKGVNGAKRWLSLKIINLQPSELMKLFIVLYAADYTVRKQAVM
Sbjct: 121 LFGITLILLLMVLVPGVGKGVNGAKRWLSLKIINLQPSELMKLFIVLYAADYTVRKQAVM 180

Query: 176 HKLVKGFFPMAAAVGLVGLLLLLEPDLGAFGVIVCIAMGILFLGGINGVWFGGIGATLVG 235
           HKLVKGFFPMAAAVGLVGLLLLLEPDLGAFGVIVCIAMGILFLGGINGVWFGGIGATLVG
Sbjct: 181 HKLVKGFFPMAAAVGLVGLLLLLEPDLGAFGVIVCIAMGILFLGGINGVWFGGIGATLVG 240

Query: 236 VFSLVIVTSPWRRERIFAYLNPWEEENALGKAYQLSHSLIAFGRGELFGVGLGSSVEKLH 295
           VFSLVIVTSPWRRERIFAYLNPWEEENALGKAYQLSHSLIAFGRGELFGVGLGSSVEKLH
Sbjct: 241 VFSLVIVTSPWRRERIFAYLNPWEEENALGKAYQLSHSLIAFGRGELFGVGLGSSVEKLH 300

Query: 296 YLPEAHTDFLLAVIGEELGFAGVLVVVLLFYWLVKHAFEIGRQAIALDLTFAGLVAKGIG 355
           YLPEAHTDFLLAVIGEELGF GVLVVVLLFYWLVKHAFEIGRQAIALDLTFAGLVAKGIG
Sbjct: 301 YLPEAHTDFLLAVIGEELGFVGVLVVVLLFYWLVKHAFEIGRQAIALDLTFAGLVAKGIG 360

Query: 356 IWLGVQAFINMGVNLGLLPTKGLTLPLMSYGGSGVLLNCVGLAILLRIDYENRVLMRGGR 415
           IWLGVQAFINMGVNLGLLPTKGLTLPLMSYGGSGVLLNCVGLAILLRIDYENRVLMRGGR
Sbjct: 361 IWLGVQAFINMGVNLGLLPTKGLTLPLMSYGGSGVLLNCVGLAILLRIDYENRVLMRGGR 420

Query: 416 L 416
           L
Sbjct: 421 L 421


>gi|300313948|ref|YP_003778040.1| rod shape-determining (RodA
           protein) transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 369

 Score =  113 bits (283), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 104/378 (27%), Positives = 191/378 (50%), Gaps = 27/378 (7%)

Query: 37  RSRMMEYDQPLIWVVLLLMLFGMVMVYSASVALPDSPKYASYSNYHFLIRQAIFIVLSII 96
           +  +  +D  L  +V L++  G+V +YSA +  P   +            Q   I+++ +
Sbjct: 13  KPHLTVFDGALSLIVFLILSVGIVTLYSAGMNFPGRVE-----------DQLRNILVAFV 61

Query: 97  AGALAFRVRMETWQKWAPYLFAITLILLLMVLIPGVGKGVNGAKRWLSLKIINLQPSELM 156
              +A  V  +   + A  ++ + + LL+ V + G+ K   G++RWL++ ++ +QPSE+M
Sbjct: 62  VMWIAANVSPQLLLRLAVPVYTVGVTLLIAVALFGIIK--KGSRRWLNIGMV-VQPSEIM 118

Query: 157 KLFIVLYAADYTVRKQAVMHKLVKGFFPMAAAVGLVGLLLLLEPDLGAFGVIVCIAMGIL 216
           K+ + L  A Y  +++ ++      F   A  + + G L++ +PDLG   +++     ++
Sbjct: 119 KIAMPLMLAWYFQKREGMLRW--DAFVVAAILLLIPGFLIIRQPDLGTGLLVLAAGFYVI 176

Query: 217 FLGGINGVWFGGIGATLVGVFSLVIVTS---PWRRERIFAYLNPWEEENALGKAYQLSHS 273
           F  G+   W    G  + G  SL +V S    ++R+R+   ++P    + LGK + +  S
Sbjct: 177 FFAGLP--WKILAGLFVAGAASLPVVWSFMHDYQRQRVMMLIDP--TSDPLGKGFHIIQS 232

Query: 274 LIAFGRGELFGVG-LGSSVEKLHYLPEAHTDFLLAVIGEELGFAGVLVVVLLFYWLVKHA 332
            IA G G + G G L  +   L ++PE  TDF+ +V  EE G  G +V+++L+  L+   
Sbjct: 233 TIAIGSGGVTGKGWLMGTQTHLEFIPERTTDFIFSVYSEEFGLIGNIVLLVLYLLLIGRG 292

Query: 333 FEIGRQAIALDLTFAGLVAKGIGIWLGVQAFINMGVNLGLLPTKGLTLPLMSYGGSGVLL 392
             I   A  L   F  L+   I +     AF+NMG+  G+LP  G+ LP MSYGG+ ++ 
Sbjct: 293 LMITANAPTL---FTRLLGGAITMIFFTYAFVNMGMVSGILPVVGVPLPFMSYGGTALVT 349

Query: 393 NCVGLAILLRIDYENRVL 410
             +G  IL+ I    +++
Sbjct: 350 LGLGAGILMSIQRHRKLV 367


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.145    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,091,036
Number of extensions: 39213
Number of successful extensions: 185
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 2
Length of query: 416
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 328
Effective length of database: 1,203,190
Effective search space: 394646320
Effective search space used: 394646320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 132 (55.5 bits)