BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0182.p
         (726 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309676|ref|YP_003773768.1| UDP-N-acetylmuramoylalanine-D-g...  1042   0.0  

>gi|300309676|ref|YP_003773768.1|
           UDP-N-acetylmuramoylalanine-D-glutamate ligase
           [Herbaspirillum seropedicae SmR1]
          Length = 710

 Score = 1042 bits (2694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 618/728 (84%), Positives = 651/728 (89%), Gaps = 20/728 (2%)

Query: 1   MNYSGKHVLVLGLGESGLAMARWLVYCGAGVRVADTRGEAALAERLATLRADAPEAQAVL 60
           MNYSGKHVLVLGLGESGLAMARWLVYCGA VRVADTRGEAALAERLA LRADAPEAQAVL
Sbjct: 1   MNYSGKHVLVLGLGESGLAMARWLVYCGASVRVADTRGEAALAERLAALRADAPEAQAVL 60

Query: 61  GQPLSPSLLDGIDFVAVSPGLAPEGELAPLMPSIAERGLPLWGEIELFAQALAALREETL 120
           GQPLSP+LL+G+DFVAVSPGLAPEGELAPLMP+IAER LPLWGEIELFAQAL ALREETL
Sbjct: 61  GQPLSPALLEGVDFVAVSPGLAPEGELAPLMPAIAERSLPLWGEIELFAQALVALREETL 120

Query: 121 YQPKVLAITGTNGKTTVTRLTGLLCQRAGLSVQVAGNISPAALDVLREAVIKDKVFLAEL 180
           YQPKVLAITGTNGKTTVTRLTGLLCQRAGLSVQVAGNISPAALDVLREAVI+DKVFLAEL
Sbjct: 121 YQPKVLAITGTNGKTTVTRLTGLLCQRAGLSVQVAGNISPAALDVLREAVIRDKVFLAEL 180

Query: 181 AEQDAIAAEQAAAEAEAQAAQQAVLDAQQAAEAEKHRRAAASIEAAAAIAVPVLQAQPQA 240
           AEQDA+AA QAAAEAEAQAAQQAVLDAQQ AEAEKHRRAAA IE AA+IAVPVLQ+ P A
Sbjct: 181 AEQDALAAAQAAAEAEAQAAQQAVLDAQQEAEAEKHRRAAARIEEAASIAVPVLQSHPVA 240

Query: 241 DAPVSASESEPEPAPQMDLLATAEEQPVAEQEAGQENVQDSVP--ASVQESVPETGQETG 298
             P S SESE E A Q+DLL  A+        A  E+ QD  P  A V  S  E   +  
Sbjct: 241 --PASLSESEQETAAQLDLLDAAD--------ASGEHAQDHQPPAADVSPSAAEAASQVD 290

Query: 299 QETAQQPAPETAHSATEASPDDAEAASSAAHEAPEPAVAATLDVASDAIPQAEIDAPATT 358
              A +P      ++   + D+A+A +  A  A   A AATLDVASD +PQA+ DAPATT
Sbjct: 291 ASAADEP-----DTSERVATDEADAVAQDASAA---AAAATLDVASDVVPQAQPDAPATT 342

Query: 359 GEAMNLGDFMEVSRKAEEDALVEVPPPPPPEPTYRGSMPQAWVLELSSFQLHTTHSLQPH 418
           GEAMNLGDFMEVSRKAEEDALVEVPPPPPPEPTYRGSMPQAWVLELSSFQLHTTHSLQ  
Sbjct: 343 GEAMNLGDFMEVSRKAEEDALVEVPPPPPPEPTYRGSMPQAWVLELSSFQLHTTHSLQAD 402

Query: 419 AAIVLNLTQDHLDWHGSMEHYAADKARIFGQDTVRVLNRDDALVMEMSSAAAPLSTFGLD 478
           AA VLNLTQDHLDWHGSMEHYAADKARIFGQ TVRVLNRDDALVM+M++A + LSTFGLD
Sbjct: 403 AATVLNLTQDHLDWHGSMEHYAADKARIFGQHTVRVLNRDDALVMQMAAAGSALSTFGLD 462

Query: 479 EPSTPNSFGLVNDNGMLWLANAFVHEDDEVPEGKRRRKQKDMLPPPVTVKRLMPADALRI 538
           EP+ PNSFGLVNDNGMLWLANAFVHEDDEVPEGKRRRKQKDMLPPPVT+KRLMPADAL+I
Sbjct: 463 EPTAPNSFGLVNDNGMLWLANAFVHEDDEVPEGKRRRKQKDMLPPPVTLKRLMPADALKI 522

Query: 539 RGAHNAMNALAALALCRAIDLPMAPLLHGLREYTGEPHRVELVGVIQDVEYYDDSKGTNV 598
           RGAHNAMNALAALALCRAIDLPMAPLLHGLR+YTGEPHRVELVGVIQ+V+YYDDSKGTNV
Sbjct: 523 RGAHNAMNALAALALCRAIDLPMAPLLHGLRDYTGEPHRVELVGVIQEVDYYDDSKGTNV 582

Query: 599 GATVAALNGLGLGGRPNRIVLIAGGDGKGQDFSPLDLPVQKYARAVLLIGRDGPAVRAAL 658
           GATVAALNGLGLGGRPNRIVLIAGGDGKGQDFSPLDLPVQKYARAVLLIGRD PA+RAAL
Sbjct: 583 GATVAALNGLGLGGRPNRIVLIAGGDGKGQDFSPLDLPVQKYARAVLLIGRDAPAIRAAL 642

Query: 659 ADSGVELIDCASLEAAVEKAGELATAGDIVLLSPACASLDMFRNYAHRAEVFVDAVRELA 718
           ADSGVELIDCASLEAAVEKAGE+ATAGDIVLLSPACASLDMFRNYAHRAEVFVDAVRELA
Sbjct: 643 ADSGVELIDCASLEAAVEKAGEIATAGDIVLLSPACASLDMFRNYAHRAEVFVDAVRELA 702

Query: 719 LSRGEVLA 726
           LSRGEVLA
Sbjct: 703 LSRGEVLA 710


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.129    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,839,250
Number of extensions: 70065
Number of successful extensions: 281
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 282
Number of HSP's successfully gapped: 1
Length of query: 726
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 634
Effective length of database: 1,184,250
Effective search space: 750814500
Effective search space used: 750814500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 134 (56.2 bits)