BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0157.p (1071 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309657|ref|YP_003773749.1| cation/multidrug efflux pump pr... 2143 0.0 gi|300309819|ref|YP_003773911.1| acriflavin resistance transmemb... 830 0.0 gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump pr... 809 0.0 gi|300310690|ref|YP_003774782.1| cation/multidrug efflux pump pr... 772 0.0 gi|300313244|ref|YP_003777336.1| multidrug efflux system transme... 750 0.0 >gi|300309657|ref|YP_003773749.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1071 Score = 2143 bits (5553), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1065/1071 (99%), Positives = 1069/1071 (99%) Query: 1 MNISKFFIDRPIFAGVLSVLLLLGGVLAMLQLPISEYPEVVPPSVVVRAQYPGANPKVIA 60 MNISKFFIDRPIFAGVLSVLLLLGGVLAMLQLPISEYPEVVPPSVVVRAQYPGANPKVIA Sbjct: 1 MNISKFFIDRPIFAGVLSVLLLLGGVLAMLQLPISEYPEVVPPSVVVRAQYPGANPKVIA 60 Query: 61 ETVASPLEEQINGVENMLYMQSQANSDGNLTITVNFRLGVDPDKAQQLVQNRVSQALPRL 120 ETVASPLEEQINGVENMLYMQSQANSDGNLTITVNFRLGVDPDKAQQLVQNRVSQALPRL Sbjct: 61 ETVASPLEEQINGVENMLYMQSQANSDGNLTITVNFRLGVDPDKAQQLVQNRVSQALPRL 120 Query: 121 PEDVQRLGVTTLKSSPTLTMVVHLTSPDNRYDTTYLRNYAVLNVKDRLARIQGVGEVGLF 180 PEDVQRLGVTTLKSSPTLTMVVHLTSPDNRYDTTYLRNYAVLNVKDRLARIQGVGEVGLF Sbjct: 121 PEDVQRLGVTTLKSSPTLTMVVHLTSPDNRYDTTYLRNYAVLNVKDRLARIQGVGEVGLF 180 Query: 181 GSGNYAMRVWLDPNKVAQRGLTASDVVRAIREQNVQVAAGVIGASPSSPETPLQLSVNAQ 240 GSGNYAMRVWLDPNKVAQRGLTA+DVVRAIREQNVQVAAGVIGASPSSPETPLQLSVNAQ Sbjct: 181 GSGNYAMRVWLDPNKVAQRGLTATDVVRAIREQNVQVAAGVIGASPSSPETPLQLSVNAQ 240 Query: 241 GRLKTEGEFRDIILKASPDGATTRLGDVARVELAASEYGLRSLLDNKPAVAIPIFQAPGA 300 GRLKTEGEFRDIILKASPDGATTRLGDVARVELAASEYGLRSLLDNKPAVAIPIFQAPGA Sbjct: 241 GRLKTEGEFRDIILKASPDGATTRLGDVARVELAASEYGLRSLLDNKPAVAIPIFQAPGA 300 Query: 301 NALDVSTQVRAAMKELSADFPSSVSYSIVYDPTQFVRASIEAVVHTLLEAIALVVIVVII 360 NALDVSTQVRAAMKELSADFPSSVSYSIVYDPTQFVRASIEAVVHTLLEAIALVVIVVII Sbjct: 301 NALDVSTQVRAAMKELSADFPSSVSYSIVYDPTQFVRASIEAVVHTLLEAIALVVIVVII 360 Query: 361 FLQTWRASIIPLLAVPVSIIGTFSLMLGFGYTINALSLFGMVLAIGIVVDDAIVVVENVE 420 FLQTWRASIIPLLAVPVSIIGTFSLMLGFGYTINALSLFGMVLAIGIVVDDAIVVVENVE Sbjct: 361 FLQTWRASIIPLLAVPVSIIGTFSLMLGFGYTINALSLFGMVLAIGIVVDDAIVVVENVE 420 Query: 421 RNIGAGLSPRDATYRAMQEVSGPIIAIALTLVAVFVPLAFMTGLTGQFYKQFAMTIAIST 480 RNIGAGLSPRDATYRAMQEVSGPIIAIALTLVAVFVPLAFMTGLTGQFYKQFAMTIAIST Sbjct: 421 RNIGAGLSPRDATYRAMQEVSGPIIAIALTLVAVFVPLAFMTGLTGQFYKQFAMTIAIST 480 Query: 481 VISAFNSLTLSPALAALLLKGHGDKPDWLTRQMDRFLGGFFIRFNRFFNRASDNYGHGVT 540 VISAFNSLTLSPALAALLLKGHGDKPDWLTRQMDRFLGGFFIRFNRFFNRASDNYGHGVT Sbjct: 481 VISAFNSLTLSPALAALLLKGHGDKPDWLTRQMDRFLGGFFIRFNRFFNRASDNYGHGVT 540 Query: 541 GVIKRKGATMGVYVVLLAATLGVSYIVPGGFVPGQDKQYLVAFAQLPNGASIDRSEEVMR 600 GVIKRKGATMGVYV+LLAATLG+SYIVPGGFVPGQDKQYLVAFAQLPNGASIDRSEEVMR Sbjct: 541 GVIKRKGATMGVYVLLLAATLGISYIVPGGFVPGQDKQYLVAFAQLPNGASIDRSEEVMR 600 Query: 601 KMSDIMLKEPGVASAIAFPGLSINGFTNSSSAGIVFVGLKPFEERKSKELSGNAIAASLN 660 KMSDIMLKEPGVASAIAFPGLSINGFTNSSSAGIVFVGLKPFEERKSK+LSGNAIAASLN Sbjct: 601 KMSDIMLKEPGVASAIAFPGLSINGFTNSSSAGIVFVGLKPFEERKSKDLSGNAIAASLN 660 Query: 661 KKFGGIKEAFTAVFPPPPVMGLGTLGGFKMQIEDRDALGYAELDKAAQAFMKAAAKEPAL 720 KKFG IKEAFTAVFPPPPVMGLGTLGGFKMQIEDRDALGYAELDKAAQAFMKAAAKEPAL Sbjct: 661 KKFGSIKEAFTAVFPPPPVMGLGTLGGFKMQIEDRDALGYAELDKAAQAFMKAAAKEPAL 720 Query: 721 GPMFSSYQINVPQLDVELDRVKAKQLGIPVTDVFNTMQIYLGSLYVNDFNRFGRVYQVRA 780 GPMFSSYQINVPQLDVELDRVKAKQLGIPVTDVFNTMQIYLGSLYVNDFNRFGRVYQVRA Sbjct: 721 GPMFSSYQINVPQLDVELDRVKAKQLGIPVTDVFNTMQIYLGSLYVNDFNRFGRVYQVRA 780 Query: 781 QADAPFRAKAEDIAQLKTRNDAGEMVPLSSVVKVKQTFGPEMVVRYNGYTAADINGGPAP 840 QADAPFRAKAEDIAQLKTRNDAGEMVPLSSVVKVKQTFGPEMVVRYNGYTAADINGGPAP Sbjct: 781 QADAPFRAKAEDIAQLKTRNDAGEMVPLSSVVKVKQTFGPEMVVRYNGYTAADINGGPAP 840 Query: 841 GYSSDQAQAAAERVAAATLPRGIKFEWTDLTYQKILAGNAGVWVFPISVLLVFLVLAALY 900 GYSSDQAQAAAERVAAATLPRGIKFEWTDLTYQKILAGNAGVWVFPISVLLVFLVLAALY Sbjct: 841 GYSSDQAQAAAERVAAATLPRGIKFEWTDLTYQKILAGNAGVWVFPISVLLVFLVLAALY 900 Query: 901 ESLTLPLAVILIVPMSILAALTGVWLTRGDNNIFTQIGLMVLVGLSAKNAILIVEFAREL 960 ESLTLPLAVILIVPMSILAALTGVWLTRGDNNIFTQIGLMVLVGLSAKNAILIVEFAREL Sbjct: 901 ESLTLPLAVILIVPMSILAALTGVWLTRGDNNIFTQIGLMVLVGLSAKNAILIVEFAREL 960 Query: 961 EMQGRTAVQAAIEASRLRLRPILMTSIAFIMGVVPLVTSSGAGSEMRHAMGIAVFFGMLG 1020 EMQGRTAVQAAIEASRLRLRPILMTSIAFIMGVVPLVTSSGAGSEMRHAMGIAVFFGMLG Sbjct: 961 EMQGRTAVQAAIEASRLRLRPILMTSIAFIMGVVPLVTSSGAGSEMRHAMGIAVFFGMLG 1020 Query: 1021 VTLFGLFLTPVFYVLLRTIDRRALHSASHHEAPMTAGTHIAHAAPGAQDDR 1071 VTLFGLFLTPVFYVLLRTIDRRALHSASHHEAPMTAGTHIAHAAP AQDDR Sbjct: 1021 VTLFGLFLTPVFYVLLRTIDRRALHSASHHEAPMTAGTHIAHAAPDAQDDR 1071 >gi|300309819|ref|YP_003773911.1| acriflavin resistance transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1048 Score = 830 bits (2143), Expect = 0.0, Method: Compositional matrix adjust. Identities = 454/1057 (42%), Positives = 660/1057 (62%), Gaps = 27/1057 (2%) Query: 3 ISKFFIDRPIFAGVLSVLLLLGGVLAMLQLPISEYPEVVPPSVVVRAQYPGANPKVIAET 62 + KFFIDRP+FA VL++ ++L G LA+ LP+S+YP + PP++VV A YPGA + + ++ Sbjct: 1 MGKFFIDRPVFAWVLAIFIMLAGALAITGLPVSQYPNIAPPTIVVTATYPGATAQTLDDS 60 Query: 63 VASPLEEQINGVENMLYMQSQANSDGNLTITVNFRLGVDPDKAQQLVQNRVSQALPRLPE 122 V S +E+++NG + + Y++SQ+ ++G + IT+ F +PD A VQNR+ + RLP Sbjct: 61 VTSLIEQEMNGADGLQYIESQSQANGQVQITITFSPETNPDLAAVDVQNRLKRVEARLPA 120 Query: 123 DVQRLGVTTLKSSPTLTMVVHLTSPDNRYDTTYLRNYAVLNVKDRLARIQGVGEVGLFGS 182 V + GV KS + + L+S D + D L +Y NV + + R+ GVG+ LFG+ Sbjct: 121 AVTQQGVQVTKSRSNFLLFIGLSSTDGKLDPVALGDYLSRNVLNEIKRVPGVGQAQLFGT 180 Query: 183 GNYAMRVWLDPNKVAQRGLTASDVVRAIREQNVQVAAGVIGASPSSPETPLQLSVNAQGR 242 AMR+W+DPNK+ LT +DV AI+ QN VA G +GA PS + +V G+ Sbjct: 181 -ERAMRIWIDPNKLIGLNLTPADVTAAIQAQNALVAGGTLGALPSPGTQQIAATVVVNGQ 239 Query: 243 LKTEGEFRDIILKASPDGATTRLGDVARVELAASEYGLRSLLDNKPAVAIPIFQAPGANA 302 L + +F +IIL+A+ +GAT RL DVARVE+ Y LD KP+ I + +P ANA Sbjct: 240 LTSPEQFGNIILRANANGATVRLRDVARVEVGGQSYDTSGRLDGKPSSFIGVQLSPTANA 299 Query: 303 LDVSTQVRAAMKELSADFPSSVSYSIVYDPTQFVRASIEAVVHTLLEAIALVVIVVIIFL 362 L +T V M+EL+ FP+ V Y+I YD ++FV+ SIE VV TL+EAI LV +V+ +FL Sbjct: 300 LGTATAVHKKMEELAKYFPTGVKYTIPYDTSKFVKISIEEVVKTLIEAIVLVFLVMFLFL 359 Query: 363 QTWRASIIPLLAVPVSIIGTFSLMLGFGYTINALSLFGMVLAIGIVVDDAIVVVENVERN 422 Q R +IIP + VPV+++GTF+ +L FG++IN L++FGMVLAIGI+VDDAIVVVENVER Sbjct: 360 QNIRYTIIPTIVVPVALLGTFATLLLFGFSINVLTMFGMVLAIGILVDDAIVVVENVERI 419 Query: 423 IG-AGLSPRDATYRAMQEVSGPIIAIALTLVAVFVPLAFMTGLTGQFYKQFAMTIAISTV 481 + GLSP DAT +AM ++SG +I I L L+AVF+P+AF G G Y+QF++++ S V Sbjct: 420 MSEEGLSPADATRKAMGQISGALIGITLVLIAVFIPMAFFGGAVGAIYRQFSLSMVASMV 479 Query: 482 ISAFNSLTLSPALAALLL----KGHGDKPDWLTRQMDRFLGGFFIRFNRFFNRASDNYGH 537 S + TL+PAL A +L KGH + GFF FNR FN + Y Sbjct: 480 FSVLMAFTLTPALCATILKPVEKGHHHEKK-----------GFFGWFNRKFNSTASGYQG 528 Query: 538 GVTGVIKRKGATMGVYVVLLAATLGVSYI-VPGGFVPGQDKQYLVAFAQLPNGASIDRSE 596 + G++ + G M VY VL+ A +G+ Y+ +P F+P +D+ Y++ QLP GAS R+ Sbjct: 529 IIGGMLNKAGRYMIVY-VLIVACVGLLYVRLPASFLPNEDQGYIITNVQLPPGASTSRTT 587 Query: 597 EVMRKMSDIMLKEPGVASAIAFPGLSINGFTNSSSAGIVFVGLKPFEERKSKELSGNAIA 656 V++++ + LK+P V AIA G S +G N +A +VF LK + +R K S +AIA Sbjct: 588 AVVKQIEEYYLKDPAVEHAIAVLGYSFSG--NGQNAALVFTPLKDWSQR-DKSQSADAIA 644 Query: 657 ASLNKKFGGIKEAFTAVFPPPPVMGLGTLGGFKMQIEDRDALGYAELDKAAQAFMKAAAK 716 F IK+A PPP+ LG GF +++DR LG+ L +A + A++ Sbjct: 645 GKAFGAFSQIKDAIVFPLNPPPIPELGNATGFTFRLQDRAGLGHTALVQARNQILGMASQ 704 Query: 717 EPALGPMFSSYQINVPQLDVELDRVKAKQLGIPVTDVFNTMQIYLGSLYVNDFNRFGRVY 776 L + + PQL +++DR KA LG+P + + + + LGS YVNDF GR Sbjct: 705 SKVLAGVRPEGLEDAPQLQLDIDRDKANALGVPFSTINSVLSTALGSSYVNDFPNLGRQQ 764 Query: 777 QVRAQADAPFRAKAEDIAQLKTRNDAGEMVPLSSVVKVKQTFGPEMVVRYNGYTAADING 836 +V QADA R + ED+ L RN +G MVP S+ V K GP ++RYNGY A I G Sbjct: 765 RVIVQADAKRRLQPEDLTNLYARNSSGTMVPFSAFVTAKWINGPVQLIRYNGYPAMKIAG 824 Query: 837 GPAPGYSSDQAQAAAERVAAATLPRGIKFEWTDLTYQKILAGNAGVWVFPISVLLVFLVL 896 G APG S+ +A A E A LP G FEWT + ++ +GN ++ +S++ VFLVL Sbjct: 825 GAAPGRSTGEAMAEMESF-VAKLPPGFGFEWTGQSLEEKTSGNQAPALYALSLIAVFLVL 883 Query: 897 AALYESLTLPLAVILIVPMSILAALTGVWLTRGDNNIFTQIGLMVLVGLSAKNAILIVEF 956 AALYES ++PLAV+L+VP+ IL AL GV L N+++ ++G++ +VGLSAKNAILI+EF Sbjct: 884 AALYESTSIPLAVMLVVPLGILGALLGVTLRAMPNDVYFKVGMIAVVGLSAKNAILIIEF 943 Query: 957 ARELEMQGRTAVQAAIEASRLRLRPILMTSIAFIMGVVPLVTSSGAGSEMRHAMGIAVFF 1016 A++L+ QG+ ++A +EA LR RPI+MTS+AFI+GV+PL +SGAGS + A+G V Sbjct: 944 AKDLQAQGKGLIEATLEAVHLRFRPIIMTSLAFILGVLPLAIASGAGSASQRAIGTGVMG 1003 Query: 1017 GMLGVTLFGLFLTPVFYVLLRTI----DRRALHSASH 1049 GM+ T+ +FL P+F+V++R I +R+ A H Sbjct: 1004 GMITATVLAVFLVPIFFVVVRKIFKGSERQRKFDAEH 1040 >gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1051 Score = 809 bits (2090), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/1049 (42%), Positives = 670/1049 (63%), Gaps = 23/1049 (2%) Query: 3 ISKFFIDRPIFAGVLSVLLLLGGVLAMLQLPISEYPEVVPPSVVVRAQYPGANPKVIAET 62 +++FFIDRPIFA V++++++LGG++++ L + +YP++ PP V ++A Y GA+ K + ++ Sbjct: 1 MARFFIDRPIFAWVIAIIIMLGGMMSIRSLSLEQYPDIAPPKVNIKATYTGASAKTLEDS 60 Query: 63 VASPLEEQINGVENMLYMQSQANSDGNLTITVNFRLGVDPDKAQQLVQNRVSQALPRLPE 122 V +E+Q+ G++N+ YM + ++S G+ T+++ F G +PD AQ VQN++ Q RLP+ Sbjct: 61 VTQVIEQQMKGLDNLQYMSASSSSAGSATVSLTFTAGTNPDVAQMQVQNKLQQVTARLPQ 120 Query: 123 DVQRLGVTTLKSSPTLTMVVHLTSPDNRYDTTYLRNYAVLNVKDRLARIQGVGEVGLFGS 182 VQ GVT K+S + MV+ LTS D R + + ++ + D+++R++GVG+V FG+ Sbjct: 121 AVQNNGVTVTKASTDILMVLSLTSDDPRITSIDIGDFISSTLTDQISRVEGVGDVTAFGT 180 Query: 183 GNYAMRVWLDPNKVAQRGLTASDVVRAIREQNVQVAAGVIGASPSSPETPLQLSVNAQGR 242 NYAMR+W+DP K+ + L SD+ A++ QN +V+AG IGA P+ P + ++ A+ + Sbjct: 181 -NYAMRIWIDPAKLQKYALMPSDITSALQAQNTEVSAGEIGALPAQPGQQINATITARSK 239 Query: 243 LKTEGEFRDIILKASPDGATTRLGDVARVELAASEYGLRSLLDNKPAVAIPIFQAPGANA 302 L T EFR+II+K+S DG+ +L DVARVEL Y + S + KP+ A+ I A GANA Sbjct: 240 LTTPDEFRNIIVKSSVDGSVVKLSDVARVELGGESYQVASQQNGKPSSALAIQLATGANA 299 Query: 303 LDVSTQVRAAMKELSADFPSSVSY--SIVYDPTQFVRASIEAVVHTLLEAIALVVIVVII 360 L + V+ + EL FP+S+ +I YD T FVR S+E VV TL+EAI LVV+++ + Sbjct: 300 LATADAVKKKLAELEPYFPASMKLKTNIAYDTTPFVRVSLEEVVKTLIEAIVLVVLIMYL 359 Query: 361 FLQTWRASIIPLLAVPVSIIGTFSLMLGFGYTINALSLFGMVLAIGIVVDDAIVVVENVE 420 FLQ RA+ IP + VPV ++GTF ++ FGY+IN L++FGMVLAIG++VDDAIVVVENVE Sbjct: 360 FLQNIRATFIPAITVPVVLLGTFGILAMFGYSINTLTMFGMVLAIGLLVDDAIVVVENVE 419 Query: 421 RNIGA-GLSPRDATYRAMQEVSGPIIAIALTLVAVFVPLAFMTGLTGQFYKQFAMTIAIS 479 R + LSP++AT ++MQE++G ++ IA+ L AVF+P+AF G TG Y+QF++TI + Sbjct: 420 RLMSEEKLSPKEATRKSMQEITGALVGIAMVLSAVFIPMAFFGGSTGVIYRQFSITIVSA 479 Query: 480 TVISAFNSLTLSPALAALLLKGHGDKPDWLTRQMDRFLGGFFIRFNRFFNRASDNYGHGV 539 +S +LTL+PAL A LLK H +Q G FF FNR F+R++ Y GV Sbjct: 480 MALSVMVALTLTPALCATLLKPHAGGH---VQQ-----GRFFTWFNRSFDRSATRYQGGV 531 Query: 540 TGVIKRKGATMGVYVVLLAATLGVSYI-VPGGFVPGQDKQYLVAFAQLPNGASIDRSEEV 598 G++KR + +Y L+A + V ++ +P F+P +D+ L+A QLP GA+ +++ V Sbjct: 532 AGLLKRGKRGLLMYA-LIAVAMAVLFMRLPTSFLPEEDQGVLMAQIQLPTGATAEQTATV 590 Query: 599 MRKMSDIMLKEP-GVASAIAFPGLSINGFTNSSSAGIVFVGLKPFEERKSKELSGNAIAA 657 ++ + + + +P V S +A G + G NS + F+ LK +E+R S + + Sbjct: 591 VKTVQEYFMNKPESVESVLAIVGAGVGG--NSQNGARAFIRLKDWEQRTGAGQSASELVR 648 Query: 658 SLNKKFGGIKEAFTAVFPPPPVMGLGTLGGFKMQIEDRDALGYAELDKAAQAFMKAAAKE 717 N I+ A + PP V GLG GF ++++D +G+ L +A F++ A Sbjct: 649 RANADLSKIRGARVFLMNPPAVRGLGQSSGFDLELKDVGGVGHDALLQARDQFLQLARSN 708 Query: 718 PALGPMFSSYQINVPQLDVELDRVKAKQLGIPVTDVFNTMQIYLGSLYVNDFNRFGRVYQ 777 L + ++ + PQL V +D KA L I +D+ T+ +G YVNDF GRV + Sbjct: 709 ALLANVRTTGLDDTPQLRVAIDDRKADALSIATSDINATLATAMGGTYVNDFLSNGRVKK 768 Query: 778 VRAQADAPFRAKAEDIAQLKTRNDAGEMVPLSSVVKVKQTFGPEMVVRYNGYTAADINGG 837 V Q D+ FR +A+D+ + RN A +MVP ++ + + T+GP ++ RYNG ++ +I G Sbjct: 769 VYVQGDSAFRMQADDLNRWYVRNAASQMVPFAAFMSSQWTYGPSLLERYNGVSSFEIVGE 828 Query: 838 PAPGYSSDQAQAAAERVAAATLPRGIKFEWTDLTYQKILAGNAGVWVFPISVLLVFLVLA 897 PA G SS A A E++ A LP GI FEWT +YQ+ L+GN ++ IS+L VFL LA Sbjct: 829 PAAGVSSGTAMAEVEKLVA-QLPAGIGFEWTGSSYQERLSGNQAPMLYAISILFVFLCLA 887 Query: 898 ALYESLTLPLAVILIVPMSILAA--LTGVWLTRGDNNIFTQIGLMVLVGLSAKNAILIVE 955 ALYES ++P AVIL VP+ I+ LTG++ N+++ Q+GL+ VGLSAKNAILIVE Sbjct: 888 ALYESWSVPFAVILAVPLGIIGTVLLTGIFGM--SNDVYFQVGLLTTVGLSAKNAILIVE 945 Query: 956 FARELEMQGRTAVQAAIEASRLRLRPILMTSIAFIMGVVPLVTSSGAGSEMRHAMGIAVF 1015 FA++L G++ +A +EA +LRLRPILMTS+AF+ GV+PL +SGAGS R A+G V Sbjct: 946 FAKQLHESGKSLWEATLEAVQLRLRPILMTSLAFMFGVLPLAVASGAGSASRRAIGTGVL 1005 Query: 1016 FGMLGVTLFGLFLTPVFYVLLRT-IDRRA 1043 GML TL G+F P+FY L+ +DRRA Sbjct: 1006 GGMLSATLLGIFFVPLFYYLIGAWLDRRA 1034 >gi|300310690|ref|YP_003774782.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1049 Score = 772 bits (1994), Expect = 0.0, Method: Compositional matrix adjust. Identities = 435/1044 (41%), Positives = 645/1044 (61%), Gaps = 15/1044 (1%) Query: 3 ISKFFIDRPIFAGVLSVLLLLGGVLAMLQLPISEYPEVVPPSVVVRAQYPGANPKVIAET 62 +++FFIDRPIFA VL+++++L G++++L LPI++YP + PP++ + A YPGA+ K + +T Sbjct: 1 MARFFIDRPIFAWVLAIIVMLAGIVSVLTLPIAQYPAIAPPAIAITANYPGASAKTLEDT 60 Query: 63 VASPLEEQINGVENMLYMQSQANSDGNLTITVNFRLGVDPDKAQQLVQNRVSQALPRLPE 122 V +E+++ G++ + YM S + S G++TIT+ F G +PD AQ VQN++S A P LP Sbjct: 61 VTQIIEQKMKGLDRLSYMASTSESSGSVTITLTFENGTNPDTAQVQVQNKLSLATPLLPS 120 Query: 123 DVQRLGVTTLKSSPTLTMVVHLTSPDNRYDTTYLRNYAVLNVKDRLARIQGVGEVGLFGS 182 +VQ+ G+T KS+ V+ TS D + L +Y NV+D ++R++GVG+ LFGS Sbjct: 121 EVQQQGITVTKSATNFLNVLAFTSEDGSMSGSDLSDYVAANVQDAISRVEGVGDTTLFGS 180 Query: 183 GNYAMRVWLDPNKVAQRGLTASDVVRAIREQNVQVAAGVIGASPSSPETPLQLSVNAQGR 242 YAMR+WLDPNK+ GLT DV AI+ QN QV++G +G P++ + ++ AQ R Sbjct: 181 -QYAMRIWLDPNKLNSYGLTPLDVKNAIQAQNAQVSSGQLGGLPAAENQQINATITAQTR 239 Query: 243 LKTEGEFRDIILKASPDGATTRLGDVARVELAASEYGLRSLLDNKPAVAIPIFQAPGANA 302 L+T +F++I+L+ GA +L DVAR+EL + Y + KPA + I A GANA Sbjct: 240 LRTADQFQNIVLRTLTGGAQVKLRDVARIELGSESYTSVGRYNGKPAAGLAIKLATGANA 299 Query: 303 LDVSTQVRAAMKELSADFPSSVSYSIVYDPTQFVRASIEAVVHTLLEAIALVVIVVIIFL 362 LD + + EL FP+ + YD T FVR SIE VV TL+EA+ LV +V+ +FL Sbjct: 300 LDTVKAIDKRVAELEKFFPTGMKVQKPYDTTPFVRISIEEVVRTLIEAVVLVFLVMYLFL 359 Query: 363 QTWRASIIPLLAVPVSIIGTFSLMLGFGYTINALSLFGMVLAIGIVVDDAIVVVENVERN 422 Q +RA++IP +AVPV ++GTF ++ FG+TIN L++F MVLAIG++VDDAIVVVENVER Sbjct: 360 QNFRATLIPTIAVPVVLLGTFGVLAVFGFTINTLTMFAMVLAIGLLVDDAIVVVENVERV 419 Query: 423 IGA-GLSPRDATYRAMQEVSGPIIAIALTLVAVFVPLAFMTGLTGQFYKQFAMTIAISTV 481 + GL P+ AT ++M ++SG ++ +AL L AVFVP+AF +G TG Y+QF++TI + Sbjct: 420 MSEEGLPPKQATRKSMGQISGALVGVALVLAAVFVPMAFFSGSTGVIYRQFSITIVSAMT 479 Query: 482 ISAFNSLTLSPALAALLLKGHGDKPDWLTRQMDRFLGGFFIRFNRFFNRASDNYGHGVTG 541 +S +L L+PAL A LLK T GFF FNR F+R++ Y V Sbjct: 480 LSVLVALVLTPALCATLLKPAAKGHALATT-------GFFGWFNRQFDRSNIRYQGIVRH 532 Query: 542 VIKRKGATMGVYVVLLAATLGVSYIVPGGFVPGQDKQYLVAFAQLPNGASIDRSEEVMRK 601 ++ R M Y VLLA + +P GF+P +D+ L A QLP+GA+ R++EV+R+ Sbjct: 533 MLGRGWRYMAAYAVLLALVVAGFMKLPVGFLPDEDQGTLFAIMQLPSGATKARTDEVIRQ 592 Query: 602 MSDIML--KEPGVASAIAFPGLSINGFTNSSSAGIVFVGLKPFEERKSKELSGNAIAASL 659 + L ++ V+ A G S G + + G F+ LKP++ERK LS +AA Sbjct: 593 VEQHFLVDQKEAVSGVFAVSGFSFAG--SGQNMGFAFIKLKPWDERKGPGLSVTDVAAKA 650 Query: 660 NKKFGGIKEAFTAVFPPPPVMGLGTLGGFKMQIEDRDALGYAELDKAAQAFMKAAAKEPA 719 F I++A F PP V LG GF + ++D LG+A L +A + ++ Sbjct: 651 GAAFANIRDARVFAFAPPAVSELGNATGFDLMLKDEANLGHAALMQARNQLLGELMQDKR 710 Query: 720 LGPMFSSYQINVPQLDVELDRVKAKQLGIPVTDVFNTMQIYLGSLYVNDFNRFGRVYQVR 779 L + + + P+ + +D KA LG+ ++D+ +T+ GS YVNDF GRV +V Sbjct: 711 LVAVRPNGLEDTPEFRLSVDTDKAGALGVAMSDINDTIATAWGSSYVNDFIDKGRVKKVM 770 Query: 780 AQADAPFRAKAEDIAQLKTRNDAGEMVPLSSVVKVKQTFGPEMVVRYNGYTAADINGGPA 839 Q DA +R D+ + RN AG MVP S+ T G + RYNG + +I G Sbjct: 771 LQGDAQYRMLPSDVDRWYVRNSAGTMVPFSAFSTASWTSGSPRLERYNGVPSMEILGMAL 830 Query: 840 PGYSSDQAQAAAERVAAATLPRGIKFEWTDLTYQ-KILAGNAGVWVFPISVLLVFLVLAA 898 PG +S A A A +P GI +EWT L+ Q K +G G+ ++ +S+L+VFL LAA Sbjct: 831 PGAASSGEAMAIVEAALAKMPPGIGYEWTGLSLQEKASSGKTGI-LYGVSILIVFLALAA 889 Query: 899 LYESLTLPLAVILIVPMSILAALTGVWLTRGDNNIFTQIGLMVLVGLSAKNAILIVEFAR 958 LYES +P +VIL+VP+ + AL G LT N+++ Q+GL+ +GL+ KNAILIVEFA+ Sbjct: 890 LYESWAVPFSVILVVPLGVFGALLGAMLTWKMNDVYFQVGLLTTIGLACKNAILIVEFAK 949 Query: 959 ELEMQGRTAVQAAIEASRLRLRPILMTSIAFIMGVVPLVTSSGAGSEMRHAMGIAVFFGM 1018 +L G++ V+A +EA R+RLRPILMTS+AFI+GV+P+V SGAG+ +HA+G AV GM Sbjct: 950 DLYEHGKSLVEATMEAVRMRLRPILMTSLAFILGVLPMVLGSGAGAGAQHALGTAVIGGM 1009 Query: 1019 LGVTLFGLFLTPVFYVLLRTIDRR 1042 L T+ +F P+F+V++ T+ R Sbjct: 1010 LSGTVLAVFFVPLFFVIIMTLFGR 1033 >gi|300313244|ref|YP_003777336.1| multidrug efflux system transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1033 Score = 750 bits (1937), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/1043 (40%), Positives = 635/1043 (60%), Gaps = 23/1043 (2%) Query: 5 KFFIDRPIFAGVLSVLLLLGGVLAMLQLPISEYPEVVPPSVVVRAQYPGANPKVIAETVA 64 +FFIDRPIFA V+++ ++L GV+AM QLPI+ YP V PP+V + A YPGA P+ + + V Sbjct: 3 RFFIDRPIFAWVVALFIVLFGVIAMSQLPIARYPSVAPPTVSINATYPGATPQTMNDGVI 62 Query: 65 SPLEEQINGVENMLYMQSQANSDGNLTITVNFRLGVDPDKAQQLVQNRVSQALPRLPEDV 124 S +E +++GV+N+LY +S A++ G I+V F+ G DP+ AQ VQN++ RLP+ V Sbjct: 63 SLIERELSGVKNLLYFESSADTSGTAQISVTFKPGTDPELAQVDVQNKLKAIEARLPQTV 122 Query: 125 QRLGVTTLKSSPTLTMVVHLTSPDNRYDTTYLRNYAVLNVKDRLARIQGVGEVGLFGSGN 184 ++ GVT ++ + ++V LTS D RYD L +Y N+ + L R++GVG V LFG+ Sbjct: 123 RQNGVTVESAASSFLLMVSLTSVDGRYDEVRLNDYLARNIVEELRRMEGVGRVQLFGA-E 181 Query: 185 YAMRVWLDPNKVAQRGLTASDVVRAIREQNVQVAAGVIGASPSSPETPLQLSVNAQGRLK 244 AMR+WLDP K+ GLT +D+ AI +QN Q+A G +G +P+ + + + QG+L+ Sbjct: 182 QAMRIWLDPFKLNAYGLTVTDISTAISQQNAQIAPGRLGDAPAVRGQQIAMPLTVQGQLQ 241 Query: 245 TEGEFRDIILKASPDGATTRLGDVARVELAASEYGLRSLLDNKPAVAIPIFQAPGANALD 304 + +F I+LKA DG+ LGDVARVEL A Y + + KPA + +PGANA+ Sbjct: 242 SPAQFAAIVLKAKADGSRVLLGDVARVELGAQSYAFANRENGKPAGVAAVQLSPGANAVR 301 Query: 305 VSTQVRAAMKELSADFPSSVSYSIVYDPTQFVRASIEAVVHTLLEAIALVVIVVIIFLQT 364 + ++A M+EL P +++S+ Y+ FV+ SI+ VV TL+EA+ LV +V+ +FLQ Sbjct: 302 TAAAIQARMEELRPSLPQGMAFSLPYNTAPFVKISIQKVVQTLIEAMVLVFLVMYLFLQN 361 Query: 365 WRASIIPLLAVPVSIIGTFSLMLGFGYTINALSLFGMVLAIGIVVDDAIVVVENVERNIG 424 R ++IP + P++++GT ++M GY++N L++FGMVLAIGI+VDDAIVVVENVER + Sbjct: 362 VRYTVIPAIVAPIALLGTLAVMQLAGYSVNVLTMFGMVLAIGIIVDDAIVVVENVERIMA 421 Query: 425 -AGLSPRDATYRAMQEVSGPIIAIALTLVAVFVPLAFMTGLTGQFYKQFAMTIAISTVIS 483 GL PR+AT +AM E++G II I L L AVF+P+A G G Y+QF++ +A+S + S Sbjct: 422 HEGLGPREATIKAMGEITGAIIGITLVLTAVFIPMALAGGSVGVIYRQFSVAMAVSILFS 481 Query: 484 AFNSLTLSPALAALLLK----GHGDKPDWLTRQMDRFLGGFFIRFNRFFNRASDNYGHGV 539 AF +L+L+PAL A LL+ GH DK GFF FNR FNR + Y + Sbjct: 482 AFLALSLTPALCATLLRPVPAGHHDKR------------GFFGAFNRAFNRLTARYESAL 529 Query: 540 TGVIKRKGATMGVYVVLLAATLGVSYIVPGGFVPGQDKQYLVAFAQLPNGASIDRSEEVM 599 +I R M VY L + +P F+P +D+ Y + QLP A+ +R+ + Sbjct: 530 GRLIARGLRMMLVYAALSGLLVVGMQALPSAFLPEEDQGYFMTSFQLPADATTERTARAV 589 Query: 600 RKMSDIMLKEPGVASAIAFPGLSINGFTNSSSAGIVFVGLKPFEERKSKELSGNAIAASL 659 + + + + ++ G +G + +A + F LK ++ERK S A+ Sbjct: 590 DQFERYLKGREDIGANLSVLGFGFSG--SGPNAAMAFTELKDWKERKGST-SAAEAMAAQ 646 Query: 660 NKKFGGIKEAFTAVFPPPPVMGLGTLGGFKMQIEDRDALGYAELDKAAQAFMKAAAKEPA 719 G+ ++ PP + LG GF M+++DR GYA L A + AAK Sbjct: 647 AAMESGVDGMVMSLL-PPAIEELGNSSGFAMRLQDRANQGYAALKAAEAQLLALAAKSRK 705 Query: 720 LGPMFSSYQINVPQLDVELDRVKAKQLGIPVTDVFNTMQIYLGSLYVNDFNRFGRVYQVR 779 L ++S + +E+DR KA LG+ + + +T+ +GS YVNDF GR+ QV Sbjct: 706 LSGVYSDGLPAGASVQLEIDRHKAAALGVSFSSISDTLSAAMGSFYVNDFPNAGRMQQVI 765 Query: 780 AQADAPFRAKAEDIAQLKTRNDAGEMVPLSSVVKVKQTFGPEMVVRYNGYTAADINGGPA 839 QA A R + ED+ +L RN +G MVPL+ +VK P + RY G+ A I+G A Sbjct: 766 LQAQASARMQLEDVMKLYVRNQSGGMVPLAELVKASWREAPTQLQRYQGFPAVRISGSAA 825 Query: 840 PGYSSDQAQAAAERVAAATLPRGIKFEWTDLTYQKILAGNAGVWVFPISVLLVFLVLAAL 899 PG +S +A A ER+ A LP G WT + Q+ L+ + +S+L+VFLVLAAL Sbjct: 826 PGVASGEAMAEMERL-AQQLPPGFAVAWTGQSLQERLSAAQAPMLMALSMLVVFLVLAAL 884 Query: 900 YESLTLPLAVILIVPMSILAALTGVWLTRGDNNIFTQIGLMVLVGLSAKNAILIVEFARE 959 YES ++PL+V+L+VP+ ++ A+ V L N++F ++G++ ++GLSAKNAILIVEFAR+ Sbjct: 885 YESWSIPLSVMLVVPLGLVGAVAAVILRDMPNDVFFKVGMITVIGLSAKNAILIVEFARQ 944 Query: 960 LEMQGRTAVQAAIEASRLRLRPILMTSIAFIMGVVPLVTSSGAGSEMRHAMGIAVFFGML 1019 L +G V+AAI+AS LRLRPILMTS+AF +GVVPL+ +SGA +E + A+G VF GM+ Sbjct: 945 LRSEGMGLVEAAIKASVLRLRPILMTSLAFALGVVPLMLASGASAETQRAIGTGVFGGMV 1004 Query: 1020 GVTLFGLFLTPVFYVLLRTIDRR 1042 T+ + PVF+VL+ +R Sbjct: 1005 SATVLAVLFVPVFFVLVLGCAQR 1027 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.137 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,916,928 Number of extensions: 113173 Number of successful extensions: 527 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 450 Number of HSP's successfully gapped: 15 Length of query: 1071 Length of database: 1,619,870 Length adjustment: 95 Effective length of query: 976 Effective length of database: 1,170,045 Effective search space: 1141963920 Effective search space used: 1141963920 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 136 (57.0 bits)