BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0154.p
         (466 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309654|ref|YP_003773746.1| sulfate permease family protein...   863   0.0  

>gi|300309654|ref|YP_003773746.1| sulfate permease family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 501

 Score =  863 bits (2231), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/466 (93%), Positives = 447/466 (95%)

Query: 1   VPECIAFALVAQLNPLMGLYGAFFICTITALFGGRPGMISGAAGSMAVVIVALVVQHGAQ 60
           VPECIAFALVAQLNPLMGLYGAFFICTITALFGGRPGMISGAAGSMAVVIVALVVQHGAQ
Sbjct: 36  VPECIAFALVAQLNPLMGLYGAFFICTITALFGGRPGMISGAAGSMAVVIVALVVQHGAQ 95

Query: 61  YFLATVVLSGVIMLLFGALRLGKLVRMVPHPVMLGFVNGLAIVIAMSQLEHFRVETPAGP 120
           YFLATVVLSG+IML FGALRLGKLVRMVPHPVMLGFVNGLAIVIA+SQLEHFR+ T AG 
Sbjct: 96  YFLATVVLSGLIMLAFGALRLGKLVRMVPHPVMLGFVNGLAIVIALSQLEHFRIATAAGT 155

Query: 121 QWLQGGALAIMIGLTLATMLIVWLLPRVTKAIPPALAAILGVGLVTYFSGLHTRTLADMA 180
           QWLQG AL +MI LTLATMLIVWLLPRVTKA+PPALAAILGVGLVTY SGLHTRTLADMA
Sbjct: 156 QWLQGSALWVMIALTLATMLIVWLLPRVTKAVPPALAAILGVGLVTYASGLHTRTLADMA 215

Query: 181 QIAGGLPPLHWPSVPMNLETLRIIGPYAVLMAIVGLLETLLTFNLTDEITASRGQPNREC 240
           QIAGGLPPLH PSVP+ LETLRIIGPYAVLMAIVGLLETLLTFNLTDEITA+RGQPNREC
Sbjct: 216 QIAGGLPPLHLPSVPLTLETLRIIGPYAVLMAIVGLLETLLTFNLTDEITATRGQPNREC 275

Query: 241 LALGAANIVSGLFGGMGGCAMIGQTMINLGSGGRSRLSGVVAGGMILLFILFLSPAIERI 300
           LALGAANIVSGLFGGMGGCAMIGQTMINLGSGGRSRLSGVVAG MILLFILFLSPAIERI
Sbjct: 276 LALGAANIVSGLFGGMGGCAMIGQTMINLGSGGRSRLSGVVAGVMILLFILFLSPAIERI 335

Query: 301 PLAALAGVMFVVAQETFAWGSLRVLGKVPRSDALVIIAVTIITVLTDLAVAVLCGIVITA 360
           PLAALAGVMFVVAQETFAWGSLRVLGKVPRSDALVIIAVT+ITVLTDLAVAVLCGIVI A
Sbjct: 336 PLAALAGVMFVVAQETFAWGSLRVLGKVPRSDALVIIAVTVITVLTDLAVAVLCGIVIAA 395

Query: 361 LNFAWQHAREIRADRRDEADGSRTYLPQGTLFFASTTHFLDLFDTANDPQQVTLDCRHLR 420
           LNFAWQHARE+R+D RDE DGSRTYLP GTLFFASTTHFL LFDT NDPQ+VTLDCRHLR
Sbjct: 396 LNFAWQHAREVRSDVRDEDDGSRTYLPHGTLFFASTTHFLALFDTGNDPQEVTLDCRHLR 455

Query: 421 LADHSAIAAVQTLAERYVRAGKELRVVALSQRCSQLLERAGLPQVA 466
           LADHSAIAAVQTLAERY R GK+LRVVALSQRCSQLL+RAGLPQVA
Sbjct: 456 LADHSAIAAVQTLAERYTRMGKQLRVVALSQRCSQLLQRAGLPQVA 501


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.141    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,340,711
Number of extensions: 53760
Number of successful extensions: 298
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 298
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 377
Effective length of database: 1,198,455
Effective search space: 451817535
Effective search space used: 451817535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 132 (55.5 bits)