BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0149.p
         (434 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309653|ref|YP_003773745.1| transmembrane protein [Herbaspi...   744   0.0  

>gi|300309653|ref|YP_003773745.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 529

 Score =  744 bits (1921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/418 (87%), Positives = 386/418 (92%), Gaps = 5/418 (1%)

Query: 1   VSQAVTRSSVPSSPPAS-----FLRRHWRGDYSLGRSYWLHTVLLTSLVPALAISVLARL 55
           +S+ VTR SV + P A+     FLRRHWRGDYSL RSYWLHTVLLTSL PALAI +LARL
Sbjct: 1   MSEVVTRPSVSAVPAAASRRPGFLRRHWRGDYSLARSYWLHTVLLTSLTPALAIPLLARL 60

Query: 56  TNDMPARYGMAGVLGIAAFSYLAWTWGVWGCWRSASKHVARGGRRWAEVVVKFLIVCGAI 115
           TNDMPARYGM GVL IAAFSYLAWTWGV GCWRSAS+HVARGGRRWAE+ VKFLI+CG I
Sbjct: 61  TNDMPARYGMGGVLFIAAFSYLAWTWGVCGCWRSASRHVARGGRRWAELAVKFLILCGVI 120

Query: 116 SMVTSTWRGAHSVREQLEIALGKQLGPPVVYQVRVDGKSVLLQGGMNDGAADGLDAILQQ 175
           SM TSTWR AHS+REQ EIALGKQLGPPVVYQ+RVDGKSVLLQGGMNDGAADGL  IL Q
Sbjct: 121 SMATSTWRAAHSLREQFEIALGKQLGPPVVYQLRVDGKSVLLQGGMNDGAADGLARILDQ 180

Query: 176 HPGVQTVVLYSAGGWVREGKLVGEVIRRRRLNTYVEQECSSSCTLAFLAGRDRAMDPRAH 235
           HP V+TVVLYSAGGWVREGKLVGEVIRRR L TYVEQECSSSCTLAFLAGRDRAMDPRAH
Sbjct: 181 HPSVRTVVLYSAGGWVREGKLVGEVIRRRGLATYVEQECSSSCTLAFLAGRDRAMDPRAH 240

Query: 236 IGFHTLYTVGGDDRINKSFDRKLTFDTYGKLGLPHDFIERIADTPAAQSWYPELGQLLQA 295
           IGFHTLYTVGGDDRINKSFDRKLTFDTYGKLGLP +FIERIADTPA+ SWYPELGQLLQA
Sbjct: 241 IGFHTLYTVGGDDRINKSFDRKLTFDTYGKLGLPREFIERIADTPASSSWYPELGQLLQA 300

Query: 296 GVLTRLAPGGETAQLATIATSRDVLEAEFKKGALFDIMARYHPADFARTIDLAWAKVQAR 355
           GVLTRLAPGGETAQLATIATSRD+LEAEFKKGALFDIMARYHP +FA TIDLAWA+VQA 
Sbjct: 301 GVLTRLAPGGETAQLATIATSRDILEAEFKKGALFDIMARYHPKEFAHTIDLAWAQVQAH 360

Query: 356 ASDAEILAVGREQVGLLSRRLLPIASDASLAEFQQLLLDEAVALRGISAAACTELIYP 413
           ASDA+ILAVGREQ+G+LSRRLLPIASDASLAEFQQLLLD+AVALRGISAAACTELIYP
Sbjct: 361 ASDAQILAVGREQIGILSRRLLPIASDASLAEFQQLLLDQAVALRGISAAACTELIYP 418


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,455,535
Number of extensions: 64888
Number of successful extensions: 221
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 221
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 346
Effective length of database: 1,203,190
Effective search space: 416303740
Effective search space used: 416303740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)