BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0145.p
         (258 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309650|ref|YP_003773742.1| hypothetical protein Hsero_0308...   348   3e-97
gi|300310618|ref|YP_003774710.1| hypothetical protein Hsero_1286...    66   3e-12

>gi|300309650|ref|YP_003773742.1| hypothetical protein Hsero_0308
           [Herbaspirillum seropedicae SmR1]
          Length = 254

 Score =  348 bits (892), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 169/217 (77%), Positives = 188/217 (86%)

Query: 42  VVGQVTHLSGVLSVRHADGARVVLSVKSAILQGDTLITERETYARVKFVDNGEIVLRPGS 101
           VVGQVTHLSGVL+ RHADG R VLSVKSAILQGDTLITERETY RVKFVDN EIVLRPG+
Sbjct: 38  VVGQVTHLSGVLTARHADGTRAVLSVKSAILQGDTLITERETYTRVKFVDNAEIVLRPGT 97

Query: 102 EVAVSKYLYDEKEPKNDAVAIGLVKGGLRAVTGLVGKRNHDAVNFDTPTATIGIRGTHFG 161
           EVAV+KY+YDEK+P+ND+VAIGLVKGGLRAVTGLVGKRNH+AVNFDTPTATIGIRGTHFG
Sbjct: 98  EVAVNKYIYDEKKPENDSVAIGLVKGGLRAVTGLVGKRNHEAVNFDTPTATIGIRGTHFG 157

Query: 162 ALYCQDDCAGVPTPSGQPPANGLHVDVVTGAIQVTNPSGSQLYSAGQFGFVPSISQPPVI 221
           AL+CQ DC G+PTPSGQ PA+GLHVDV +GAI V+N  G+QL++AGQFG+V    QPPV+
Sbjct: 158 ALFCQADCGGIPTPSGQAPADGLHVDVASGAILVSNAGGAQLFNAGQFGYVSGPLQPPVV 217

Query: 222 VPPAQGVTVTMPPAISSNGNTGTQKIGAAKLDACVTQ 258
           VP   GV VTMPPAISSN N G QK+GAA    CV  
Sbjct: 218 VPANIGVPVTMPPAISSNTNNGMQKLGAASAPDCVVH 254


>gi|300310618|ref|YP_003774710.1| hypothetical protein Hsero_1286
           [Herbaspirillum seropedicae SmR1]
          Length = 166

 Score = 65.9 bits (159), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 58/96 (60%), Gaps = 1/96 (1%)

Query: 65  LSVKSAILQGDTLITERETYARVKFVDNGEIVLRPGSEVAVSKYLYDEKEPKNDAVAIGL 124
           L+V   + +GD ++T   +       D+  I L P S+  + +++++EK  + + +A+ +
Sbjct: 65  LAVGERLYEGDRVLTAAASSVGFTLRDDTLISLGPNSQFLLEQFVFNEKTDEGN-IAVRM 123

Query: 125 VKGGLRAVTGLVGKRNHDAVNFDTPTATIGIRGTHF 160
           VKG LR V+GL+GK   +   F TPTATIGIRGT F
Sbjct: 124 VKGTLRYVSGLIGKHAPERQQFSTPTATIGIRGTDF 159


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 741,228
Number of extensions: 29544
Number of successful extensions: 92
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 2
Length of query: 258
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 175
Effective length of database: 1,226,865
Effective search space: 214701375
Effective search space used: 214701375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)