BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0144.p
         (1371 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309649|ref|YP_003773741.1| hemagglutinin-like protein [Her...  1155   0.0  
gi|300310333|ref|YP_003774425.1| filamentous hemagglutinin outer...   127   7e-30

>gi|300309649|ref|YP_003773741.1| hemagglutinin-like protein
            [Herbaspirillum seropedicae SmR1]
          Length = 1422

 Score = 1155 bits (2987), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 791/1488 (53%), Positives = 951/1488 (63%), Gaps = 183/1488 (12%)

Query: 1    MTSPSTPAPAPVPPAIELLPPSITVRVGKRRLTLSWRARKPLPLLLSRLLQRAWKRVLAS 60
            MT+ S  A     PAIELLPPS+TVRVG+RRLTLSWRARKPLP LL+ LL+R+W R+LA 
Sbjct: 1    MTTTSASAQGSSRPAIELLPPSLTVRVGRRRLTLSWRARKPLPQLLAGLLRRSWTRLLAP 60

Query: 61   GLRLSLAAAAVCGAWQAPAPPRLRPPGTLPTGWSVANGNLSFSQNGNTLNINQLSPQAIA 120
             LR+S+A AAVCGAWQAP       PGTLPTGWSV NGN++F QNGN LNINQLSPQAIA
Sbjct: 61   ALRISVATAAVCGAWQAPVLAAAPAPGTLPTGWSVVNGNVTFIQNGNILNINQLSPQAIA 120

Query: 121  RFASFSIGADAAVNVAQPSSSAALLAKVTGADISQIYGKLSANGTVVLYNPNGVVIGPGG 180
            +F SFSIGADA VNV QPS++AALLAKV+G DISQIYGKLSA GTVVLYNPNGVVIGP G
Sbjct: 121  QFLSFSIGADATVNVNQPSAAAALLAKVSGGDISQIYGKLSATGTVVLYNPNGVVIGPSG 180

Query: 181  TVDAARFIATSLAISDNDFLAGRLNFIKDGNAGLVDNQGKISSATGGSVYLIGGSVSNSG 240
            ++DA RFIATSLAISD+DFLAG+LNF + GNAG+VDNQGKI SATGGSVYLIG SVSNSG
Sbjct: 181  SIDAGRFIATSLAISDSDFLAGKLNFARQGNAGIVDNQGKIQSATGGSVYLIGSSVSNSG 240

Query: 241  IITSPQGEVILAAGQTVTLADTATPGVTVNVTGSAGNVTNLGTITAEAGRIGVAAGLITN 300
            II S QGEVILAAG+TVTLADTATPGVTVNVTGSAGNVTNLG+ITAEAGRIGVAAGLI N
Sbjct: 241  IIKSAQGEVILAAGETVTLADTATPGVTVNVTGSAGNVTNLGSITAEAGRIGVAAGLINN 300

Query: 301  GGVINASSVVREGGRIFLRASGNLTTTASSSISADGTKGGNVTLYAANAAFIDGDVSALG 360
             GVINASSVVREGGRIFLRAS NLTT+ASSSI ADG++GGN+ L A + AFIDGDVSA G
Sbjct: 301  SGVINASSVVREGGRIFLRASQNLTTSASSSIHADGSRGGNIALVAQDQAFIDGDVSATG 360

Query: 361  APGQGGFVDTSGLKRLDVVKVPKVGTGGTWLIDPHDLEVVPNTTTNVSFD-GCSSYAVTS 419
            APGQGGFV+TSGLKRLDVVK P +G GGTWLIDP DLEVV   +  VS   G  SYA+++
Sbjct: 361  APGQGGFVETSGLKRLDVVKAPTLGAGGTWLIDPSDLEVVSGGSRTVSTSTGNGSYAISA 420

Query: 420  TDSGATISAATISNQLSNGVSVSLTTGDSDGVGGNITVSANITKSGGADSTLTLNSANNI 479
              S + I A TI  QL  GV+V+L TG      GNITVS+ I K  G  ++LTLN+ANNI
Sbjct: 421  NGSSSQIGADTIVGQLEAGVNVTLATGADGSQAGNITVSSAIVKQAGGAASLTLNAANNI 480

Query: 480  SIRANIISESGRLGLTLNSGYVQSSQESFSEARIMDAVKPRNLSTIDNGARIVLNGGSLT 539
            SI A+I S SG L LTL++G  +     FS AR          STI NGARI LNGG L 
Sbjct: 481  SINADIRSTSGALTLTLHTGAGEGVD--FSAAR---------QSTIGNGARISLNGGDLY 529

Query: 540  VTDD-SSNGDLLINNGTVNL-GSGNLYAAAVRVNSAGTLTLNGGGGNISSLTNNGTVSVA 597
              D     G+LLI+NG+V L G+  L         AG L L+GGG   S +  +G  SV 
Sbjct: 530  AMDGVEGRGNLLISNGSVWLDGTSTLR--------AGRLQLDGGG---SLVYASGNSSVT 578

Query: 598  SNGEGRLWVGSDGITNNGTF--NISGRVNSSGDVTNNANATLVLNGDAAVLSVTGNASVS 655
             N         D + NNGT   N SGR+ S G V NN N +L  +G + + S T   S+S
Sbjct: 579  LN---------DALINNGTIQVNASGRLYSDGGVYNNGNLSLA-DGTSLMASST---SLS 625

Query: 656  NYGTLTMAGGNVSASYIRNEANGTMSGNGTLSVSGSFTNDGILAPGGDGTVGRLALRATG 715
            N GT+T++ G ++ S I N  N T+ G+G+L  +    N+G+LAPGGDG +G L +    
Sbjct: 626  NNGTVTLSNGTLNFSSITNNQNATILGSGSLVAAEGVVNNGVLAPGGDGIIGNLTIA--- 682

Query: 716  DPSDASFSQGDTGKMLIDIAGASDGSYDVIELTGFSSTRLDGSLKTRLLGGYSPAGEVS- 774
                 +++QGDTG MLID+  A  GS D +  +G +   L G LKT +LG  S   E S 
Sbjct: 683  ----GNYTQGDTGAMLIDVTPA--GSNDNVVFSG-AFAHLGGMLKTHVLGNVSEVAEGSN 735

Query: 775  INAINISGTSSPTGYFRSVTGDIVTAGGQEKMFKAVYGDNGLANLSLRGAETFTYQQYGY 834
                N   TS    YFR V+GD+    G + M KA Y +  L    +R    +      Y
Sbjct: 736  FMPFNFQSTSLGDSYFRYVSGDVSNIDGIKTMLKANYTEGPLRLTMMRSTTFYASGSNSY 795

Query: 835  SEGGWEDRHNWVSNATVGNVSTYMPTQIDTVVISGNQTVR-HDSVDDTIANLQIAAGSQL 893
                W  R  W      G  STY+PT+IDTVVI  N TV   D V D I+ LQ+    Q 
Sbjct: 796  ----WGARETW-----SGGGSTYLPTEIDTVVIDSNNTVTLSDGVGDKISRLQVKGSGQF 846

Query: 894  NQRGGTLTVRNSTSNNGTISVNRMS----GSNN---SIAALVLNGTTSGNGTL------- 939
            NQ GG LTV N    +GT+ ++  S    GSN+   S+A  + +G   GN TL       
Sbjct: 847  NQTGGALTVVNGAVIDGTVDISGGSFTSNGSNSVTGSVALGMQDGGVRGNATLAGWTSVR 906

Query: 940  -------NIGSTDFINGETVLLNGTVTLANAAQ------SNM--TAELVAGNLTLGGDVR 984
                   N G+ +F NG + LL G+    +A Q      SN+  T  +  G LT  GD  
Sbjct: 907  SGAQINVNGGTLNF-NGTSNLLEGSTVDLSAGQLTFNGTSNLAGTVTVRGGTLTTAGDTT 965

Query: 985  LS-NLTVSNGTVT-GNVGS---RLVVADAFSQTG---------------GNLTLADAALS 1024
            LS N+ V++G VT G V     RL +  A S  G               G++T+A+A+ S
Sbjct: 966  LSGNMQVNSGNVTLGGVTDGTGRLTLGTAGSNEGNDDGGNLIALPPVGDGSVTIANASHS 1025

Query: 1025 QA-----TGSLAIG--------NITANNLV------------LQAANGNLT-------QS 1052
                   +G L +G        N+T  N+              Q   GNLT       QS
Sbjct: 1026 SLNVDLNSGDLTLGGDVRLAALNVTQGNVTGNIGSRLVVAESFQQTGGNLTLADAALSQS 1085

Query: 1053 TGTSMR---VKSQLIASASSGITFNNSG-----------------------NQIAGFAAN 1086
             G+ +      + L+  A S   F  SG                       NQIAGFAAN
Sbjct: 1086 NGSLIVGNITANNLVLEAQSANIFQQSGSALHVKQQLITSATDGISLTETGNQIAGFAAN 1145

Query: 1087 NSGTGDITLKNALNTSDASAVSINGVTTARGNISIDNTGGVVTSAIGTRASFLGSLPSNA 1146
            N G+GDI L N LNT+DAS V+INGV T  G+I IDNTGG+ T+A+G  ASFLG+LPS+A
Sbjct: 1146 NQGSGDIRLINQLNTADASVVTINGVHTVHGDIHIDNTGGMRTAALGDSASFLGALPSSA 1205

Query: 1147 NGTAISTDSKLATLGI--NSTGQLKSSNGSVSVVTHSPLTIGSGGVSATGTITLTASASS 1204
             G    T +KLA LG+  N+ GQ+K+ NG+V++VTHSP+ IG+GGVSATG ITLTASAS+
Sbjct: 1206 EGDPPGTAAKLAMLGMSSNTNGQVKTDNGAVTMVTHSPMAIGAGGVSATGDITLTASASA 1265

Query: 1205 GSNDTLTVNGVLVSTGGNITLSAGDSMTINANISTSPPGVALLSVDSGQVIGYAQGVTIV 1264
            GSNDTL VNGVLVS GGNI LSAGDSMTINANISTSPPGVAL SVDSG VIGYAQGV IV
Sbjct: 1266 GSNDTLVVNGVLVSLGGNIRLSAGDSMTINANISTSPPGVALFSVDSGAVIGYAQGVRIV 1325

Query: 1265 DANGTRTPVAASSSSSSSSSNSNSSSTSSSASNSQTALAVQQQQNQQSRDLQASLNNAQL 1324
            DANGTR PV AS++SS           +    N+QT+ AVQQQQNQQS++LQA++N+A+L
Sbjct: 1326 DANGTRIPVPASATSS-----------AGGGGNTQTSQAVQQQQNQQSQNLQATVNSARL 1374

Query: 1325 TDTVPATSGNVVQQTGATTQTVGGTTDHFGDE-GDDRKQAKKPLPMCT 1371
            +D    ++GN VQQ+ +  QTVGGT   FGD+ G D K A+K LPMCT
Sbjct: 1375 SDPNAQSTGNPVQQSSSGGQTVGGTAGSFGDDSGGDSKAARKALPMCT 1422


>gi|300310333|ref|YP_003774425.1| filamentous hemagglutinin outer
           membrane protein [Herbaspirillum seropedicae SmR1]
          Length = 1568

 Score =  127 bits (319), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 114/328 (34%), Positives = 161/328 (49%), Gaps = 38/328 (11%)

Query: 30  RRLTLSWRARKPLPLLLSRLL----QRAWKRVLASGLRLS--LAAAAVCGAWQAPAPPRL 83
           R   L W       +++S +     +RA ++V+A+ L +S  LA AA             
Sbjct: 9   RIYRLVWSHVHQAWVVVSEVSRGQGKRANRKVIAAALLVSPLLAQAA------------- 55

Query: 84  RPPGTLPTGWSVANGNLSFSQNGNTLNINQLSPQAIARFASFSIGADAAVNVAQPSSSAA 143
                 P G  V  G  S SQ+GNT  I Q S      + SF+  +   VN  QPS+SA 
Sbjct: 56  ------PVGGQVTAGAGSISQSGNTTTITQSSQNLSVNWQSFNTASHETVNFIQPSASAI 109

Query: 144 LLAKVTGADISQIYGKLSANGTVVLYNPNGVVIGPGGTVDAARFIATSLAISDNDFLAGR 203
            + ++   + ++ +G+L+ANG V L NPNGV+ G G  V+    +A++L +SD    A  
Sbjct: 110 AVNRIYDTNPTRFFGQLNANGQVYLINPNGVLFGAGSQVNVGGLVASTLDMSDASLAAAA 169

Query: 204 LNFIKDGNAGLVDNQGKISSATGGSVYLIGGSVSNSGIITSPQGEVILAAGQTVTLADTA 263
            NF   G   ++ NQG IS A GG V  IG +VSN G IT+P G V LAAG  VTL    
Sbjct: 170 RNFSGSGTGSII-NQGDISVANGGYVAFIGNTVSNQGNITAPAGTVALAAGNDVTLTFAN 228

Query: 264 TPGVTVNVTGSAGN--VTNLGTITAEAGRIGVAAG--------LITNGGVINASSVVREG 313
              V + V  +  N    N G I A+ G + ++AG        ++ N G+I A SV    
Sbjct: 229 ASLVKLQVNQNTLNNLSENGGLILADGGAVLMSAGAKDAVLASVVNNTGIIEARSVQNVN 288

Query: 314 GRIFLRASGNLTTTASS-SISADGTKGG 340
           GRI L   GNL T ++S ++ A G   G
Sbjct: 289 GRIVLDG-GNLATVSNSGTLDASGKNAG 315


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.308    0.126    0.343 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 3,729,789
Number of extensions: 158626
Number of successful extensions: 867
Number of sequences better than 1.0e-08: 7
Number of HSP's gapped: 729
Number of HSP's successfully gapped: 20
Length of query: 1371
Length of database: 1,619,870
Length adjustment: 97
Effective length of query: 1274
Effective length of database: 1,160,575
Effective search space: 1478572550
Effective search space used: 1478572550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 137 (57.4 bits)