BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0140.p
         (580 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309643|ref|YP_003773735.1| adenylate cyclase [Herbaspirill...   890   0.0  

>gi|300309643|ref|YP_003773735.1| adenylate cyclase [Herbaspirillum
           seropedicae SmR1]
          Length = 757

 Score =  890 bits (2300), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/551 (82%), Positives = 495/551 (89%)

Query: 1   MLRRLRTAFAKYWARWLLALLLIGLAEAVVVGLLPNRVVERMDLFFYDLRMRVAKPALDP 60
           MLRRLRTAFA YWARWLLAL+L GLA A V+ LLPNR+VERMDLFFYDLRMRVA+P LDP
Sbjct: 1   MLRRLRTAFATYWARWLLALVLTGLATAQVMALLPNRLVERMDLFFYDLRMRVAQPDLDP 60

Query: 61  RIVIVDIDERSINELGRWPWSRDLVAKLVEQMTQAYQAQSVGFDVVFAEPDTTSGYGRLE 120
           RIVIVDIDE+SI ELGRWPWSRD++A+LV QMTQ YQAQSVGFDVVFAEPDT+SGYGRL 
Sbjct: 61  RIVIVDIDEKSIAELGRWPWSRDVIAQLVRQMTQTYQAQSVGFDVVFAEPDTSSGYGRLA 120

Query: 121 DLARGPLKDVPKLAQQLRLLKPQMDYDARLAAALQGQPVVMGYAFSNEGGAVIKGQLPPP 180
            LA GPLKDVP+ A+QL+ LKPQMDYDARLA AL+GQPVVMGY  SNE GA+ KGQLPPP
Sbjct: 121 QLADGPLKDVPQFARQLQALKPQMDYDARLAEALRGQPVVMGYNLSNEAGAIAKGQLPPP 180

Query: 181 AFSVAALGGRDVEVVRWRAYGANLPQLQAAARAGGFFNPVPDDDGLIRTVSLLARHGDNF 240
           AFSVA LGGR ++V  WRAYGANLPQLQAAARAGGFFNPVPDDDGLIR V L+A+ G++F
Sbjct: 181 AFSVADLGGRALDVTHWRAYGANLPQLQAAARAGGFFNPVPDDDGLIRAVPLMAQVGEHF 240

Query: 241 YESLALATARVAVDGKRIKPVFLTGEDGLLGNQKETYDALAAIAVEARPQPLIIPVERGL 300
           YESLALATARVA+DG+RIKP+FL  +D L   Q   Y ALA IAVE RPQPL IPVER L
Sbjct: 241 YESLALATARVALDGRRIKPIFLQRQDVLFEGQLRDYGALAGIAVETRPQPLFIPVERHL 300

Query: 301 TTLVTYRGRGGPQGGAYRYVPAVDVIRGTYPHDKLDGRIMLVGTTVPGLNDLRATPVSPV 360
           TTLV+YRG+GGP GGA+RYVPAVDVIRGTYPH +LDGRIMLVGTTVPGLNDLRATPV+PV
Sbjct: 301 TTLVSYRGKGGPNGGAFRYVPAVDVIRGTYPHAQLDGRIMLVGTTVPGLNDLRATPVNPV 360

Query: 361 YPGVEIHANLIASIIDDDFKTRPDFAAGYDGLQVALAGLLLGLMLPALGPLASVLLSLGT 420
           YPGVEIHANLIASIID DFK RPDFA GYD LQV   G+LLGL+LP LGPL S++L+L T
Sbjct: 361 YPGVEIHANLIASIIDGDFKARPDFAVGYDLLQVLAVGVLLGLLLPMLGPLWSIVLTLAT 420

Query: 421 AAALGGLNYWLYDSAGLVLPLASSLLLVALLFISNLAWGYLFEYRNRKAIVNLFGEYVAP 480
           AA LGGLN+WLYDSAG+VLPLA++LLLVA LFI NL WGYLFEYRNRKAIVNLFGEYVAP
Sbjct: 421 AAGLGGLNFWLYDSAGMVLPLATALLLVASLFICNLGWGYLFEYRNRKAIVNLFGEYVAP 480

Query: 481 ELVAEMAANPASYNMEGEIRELTVMFSDVRGFTTISESLQPNELREYINMYLTAMSEDIR 540
           ELVAEMAANPASYNMEGEIRELTVMFSDVRGFTTISESLQPNELREYIN+YLTAMSEDIR
Sbjct: 481 ELVAEMAANPASYNMEGEIRELTVMFSDVRGFTTISESLQPNELREYINVYLTAMSEDIR 540

Query: 541 GNRGTLDKYIG 551
           GNRGTLDKYIG
Sbjct: 541 GNRGTLDKYIG 551


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.140    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,682,694
Number of extensions: 72006
Number of successful extensions: 225
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 490
Effective length of database: 1,193,720
Effective search space: 584922800
Effective search space used: 584922800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)