BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0138.p
         (221 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313542|ref|YP_003777634.1| hydantoin racemase [Herbaspiril...    77   8e-16

>gi|300313542|ref|YP_003777634.1| hydantoin racemase [Herbaspirillum
           seropedicae SmR1]
          Length = 244

 Score = 77.4 bits (189), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 69/215 (32%), Positives = 103/215 (47%), Gaps = 19/215 (8%)

Query: 4   ILLINPNSSQATTEMMVAIARTSLPAGYALSGVTARQGPEMIVNAVE--LAAAG--AEVE 59
           I LINPN++ + TE M A AR    AG  ++GV+   GP  I +  +  LA  G   E+E
Sbjct: 3   IKLINPNTTWSMTEAMTACARQVAAAGTEVTGVSPEMGPASIESHYDEALAVPGLLQEIE 62

Query: 60  RNWREGGRHSVGCIISAFGDPGIERLRALDGRPVAGLCQASMLEAAEGGRRFGVATVTPE 119
           R  R+G    V   I+ FGDPG+   R L   PV G+ +A+M  A+     F V T    
Sbjct: 63  RGERDGYDAYV---IACFGDPGLSAARELAQGPVIGIAEAAMHMASLIAPSFSVVTTLAR 119

Query: 120 LADVIGEKAQQAGVGALYTGIR------LTAGDPRALAADPQALEEALAQAVRACVERDG 173
            + +    A++ G+      +R      L   DP   A+D +A    +    R  +  DG
Sbjct: 120 TSGMAWHLAERYGMQRFCRNVRACEIAVLELEDP---ASDARA---RITDECRRALAEDG 173

Query: 174 AEAVVIGGGPLGQAAMALAQRFSVPVIAPIPAAVR 208
           AEA+V+G   + +   A+ +    PVI  + AAV+
Sbjct: 174 AEAIVLGCAGMAELCAAIGRDIGAPVIDGVTAAVK 208


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 701,469
Number of extensions: 29733
Number of successful extensions: 185
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 139
Effective length of database: 1,231,600
Effective search space: 171192400
Effective search space used: 171192400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)