BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0136.p
         (282 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312817|ref|YP_003776909.1| transcription regulator protein...    66   3e-12
gi|300312806|ref|YP_003776898.1| transcription regulator protein...    63   3e-11

>gi|300312817|ref|YP_003776909.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 293

 Score = 66.2 bits (160), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 116/264 (43%), Gaps = 15/264 (5%)

Query: 27  ADFLLEFPGELASYAGNELAQLAGVSPSTVSRFIRRVGYESYEEARRHVREEQETGSPLF 86
           A FLL+ PGE+A      L+Q A V PST  R  + +G+  + E R  +  E+  G P  
Sbjct: 33  AAFLLDNPGEVAVSTMRALSQKAQVQPSTFVRLAQHLGFAGWAELRA-LFVERLAGEPKA 91

Query: 87  HA-SSSGAARQVRS---VAAHFQQSQQNLAATFERLSDATLAEIARAIVNAPHVLIFGSR 142
           +A  +    R+  S   VA  F   + NL A+  + +D  L   ARA++ A HV I G R
Sbjct: 92  YAFKAKSIVRRSNSDKLVAELFTAQRANLDASEPKSADRMLGA-ARALLKAHHVHIAGFR 150

Query: 143 SSQAFALYLRWQIIQVLPRVTCLPGPGETLAEYTAGLSERDCVIVFGTRRQTGQMDRLLE 202
           ++ + +  L +        V+ + G   ++      ++  D VIV      + +  R+ E
Sbjct: 151 AAFSISFLLHYLYRLFRTSVSLVRGSEGSIELELRAIAAHDAVIVVSFAPYSTEAVRVAE 210

Query: 203 AATRAGSYLLYISDQASADYALATWSLQAHC-----RGPGSLDNHVGVMALCDLLSTLVI 257
           AA +AG+ L+ ++D A A  AL       HC       P    +     A+ + L  LVI
Sbjct: 211 AAKQAGAKLIALTDSAVAPIALKA----DHCILFSHESPSFFPSMAAATAIAESLIELVI 266

Query: 258 EASGAAGRKRLAAVEQEHEELGDF 281
                   +RL   E +    G +
Sbjct: 267 SIDDEHAVRRLELAESDLHSTGAY 290


>gi|300312806|ref|YP_003776898.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 319

 Score = 63.2 bits (152), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 99/210 (47%), Gaps = 15/210 (7%)

Query: 30  LLEFPGELASYAGNELAQLAGVSPSTVSRFIRRVGYESYEEARRHVREEQETGSPLFHAS 89
           L+E P E+A  +  +LA   GV+ ST++R   R+GY  + + +   R+   +    F++ 
Sbjct: 56  LVERPEEVAVRSITDLAASLGVNASTLTRLATRLGYSGFVDFQNVFRDGLASSHRNFYSQ 115

Query: 90  ------SSGAARQ---VRSVAAHFQQSQQNLAATFERLSDATLAEIARAIVNAPHVLIFG 140
                 + G  R    V +VA    +S +N+ +   +LS   L    + +  A HV I+G
Sbjct: 116 QAQRLITDGPGRHEGDVLAVAQLAAESARNMESCLAQLSAVELRGAVKLLARARHVRIYG 175

Query: 141 SRSSQAFALYLRWQIIQVLPRVTCLPGPGETLAEYTAGLSERDCVIVFGTRRQTGQMDRL 200
            R   + A +L + +  +   V+ L  PG+ +AE  A L   D ++V      T  +  +
Sbjct: 176 VRQMHSLASFLCYGLGMIRSEVSLLDAPGQGIAEGLAQLQRGDVLVVASVSPYTRIVAEV 235

Query: 201 LEAATRAGSYLLYISDQ------ASADYAL 224
            +AA+ AG  ++ ++D       +SA YA 
Sbjct: 236 AQAASNAGLNVIALTDNRASPLVSSAKYAF 265


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.131    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 842,761
Number of extensions: 33809
Number of successful extensions: 183
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 3
Length of query: 282
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 198
Effective length of database: 1,222,130
Effective search space: 241981740
Effective search space used: 241981740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)