BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0125.p
         (814 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309633|ref|YP_003773725.1| TonB-dependent receptor protein...  1512   0.0  

>gi|300309633|ref|YP_003773725.1| TonB-dependent receptor protein
           [Herbaspirillum seropedicae SmR1]
          Length = 807

 Score = 1512 bits (3915), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 757/814 (92%), Positives = 788/814 (96%), Gaps = 7/814 (0%)

Query: 1   MQCKLTRLSLLISGLFMAGAPAFSFAQTTTTDVGTVTVQGGGSASAGTAAATGLIQAEDS 60
           MQCKLTRLSLLISGLF+AGAPA +    TTT+VGTVTVQGGGSASAGTAAATGLIQAEDS
Sbjct: 1   MQCKLTRLSLLISGLFIAGAPALA---QTTTNVGTVTVQGGGSASAGTAAATGLIQAEDS 57

Query: 61  PKARSSVNRDYIEKQSPTGTPYQMINLLPGVNTYDNDGSGLFGGNIRVRGFNSDQLGFTI 120
           PKARSSVNR+Y+EKQSPT  PYQMINLLPGVNTYDNDGSGLFGGNIRVRGFNSDQLGFTI
Sbjct: 58  PKARSSVNREYMEKQSPTSNPYQMINLLPGVNTYDNDGSGLFGGNIRVRGFNSDQLGFTI 117

Query: 121 NGAPVNDSGNFAVYPQEYTEPDNLCNIFVTQGSTDTEAPHVGATGGNIGMTFCAPEDQQR 180
           NGAPVNDSG+FAVYPQ+YT+P+NLC++FVTQGSTDTEAPHVGA+GGNIGM FCAPEDQQR
Sbjct: 118 NGAPVNDSGSFAVYPQQYTDPENLCDVFVTQGSTDTEAPHVGASGGNIGMAFCAPEDQQR 177

Query: 181 IRVTNAFGSNSLWKRYVRFDSGKLLDNKFKFFISYSKTTADKFKGPGGAIKDHVDIGTNF 240
           IRVTNAFGSNSLWKRYVRFDSGKLLDN+FKFFISYSKTTADKFKGPGGAIKDHVDIGTNF
Sbjct: 178 IRVTNAFGSNSLWKRYVRFDSGKLLDNRFKFFISYSKTTADKFKGPGGAIKDHVDIGTNF 237

Query: 241 DLGQGSFINANLLYNRQLNNNYRSLTKTQISQLGRNADFGSTIPQHQPAVAGTAQNDTTY 300
           DLGQGSFINANLLYNRQLNNNYRSLTKTQI+QLGRNADFGS  PQHQPAV GTAQNDTTY
Sbjct: 238 DLGQGSFINANLLYNRQLNNNYRSLTKTQIAQLGRNADFGSIAPQHQPAVGGTAQNDTTY 297

Query: 301 APNVAANIANNAYYAYNLNPFENWLGTINAHFQLSPTSSLDIDPYFWYGFGTGGNQLQTV 360
           APNVAANIA N YYAYNLNPFENWLGTINAHFQLSPT+SLDIDPYFWYGFGTG NQLQTV
Sbjct: 298 APNVAANIAANGYYAYNLNPFENWLGTINAHFQLSPTASLDIDPYFWYGFGTGANQLQTV 357

Query: 361 REGGVTGASQLGGGARDVNGDGDRLDTVYAYEGSRTRTYRPGVTFKFNQQLDNHRILAGY 420
           REGGV GASQ+GGGA D+NGDGDRLDTVYAY+GSRTRTYRPGVTFKFNQQ+DNHR+LAGY
Sbjct: 358 REGGVAGASQVGGGAADINGDGDRLDTVYAYQGSRTRTYRPGVTFKFNQQMDNHRLLAGY 417

Query: 421 WVERARHQQTGPFSRVDNNGNIADLWQDNSDQWLRNADGSILQYRDTMTVSTAQSIFLQD 480
           WVERARHQQTGPFSRVDNNGNIA+LWQDNSD WLRNADGSILQYRDT+TVSTAQSIFLQD
Sbjct: 418 WVERARHQQTGPFSRVDNNGNIANLWQDNSDLWLRNADGSILQYRDTLTVSTAQSIFLQD 477

Query: 481 SISMMNDKLNVQVGGRYSSIDRDFTNYPSTGSTSGTNSYSSAGYYKVKKNYADFLPSLGV 540
           SISMMNDKLNVQVGGRYSSIDRDFTNYPS+G+ +     +SAG+YKVKKNYADFLPSLGV
Sbjct: 478 SISMMNDKLNVQVGGRYSSIDRDFTNYPSSGAANN----ASAGFYKVKKNYADFLPSLGV 533

Query: 541 RFQLDEKQSVFFNAAKNFKAPGNFSYFGLLSGGTIVNGQLVGATQREVPVDKETSWNYDL 600
           RFQLD+ QSVFFNAAKNFKAPGNFSYFGLLSGGTIVNGQLVGATQREVPVDKETSWNYDL
Sbjct: 534 RFQLDDAQSVFFNAAKNFKAPGNFSYFGLLSGGTIVNGQLVGATQREVPVDKETSWNYDL 593

Query: 601 GYRYNTEKWMASGSLFYIDYHNRIASAYNPDTNNKTDYNVGDASSHGLELETGYAFTRNL 660
           GYRYNTEKWMAS SLFYIDYHNRIASAYNPDT NKTDYNVGDA+SHG+ELE+GYAFTRNL
Sbjct: 594 GYRYNTEKWMASASLFYIDYHNRIASAYNPDTGNKTDYNVGDATSHGMELESGYAFTRNL 653

Query: 661 SMYGSLSYIKSKMKQDLRNSSTQFLPTSGKEFPDTPNWLSGLSLQYQQDGWYVFGQAKYT 720
           SMYGSLSYIKSKMKQDLRNSSTQFLPTSGKEFPDTPNWLSGLSLQYQQDGWYVFGQAKYT
Sbjct: 654 SMYGSLSYIKSKMKQDLRNSSTQFLPTSGKEFPDTPNWLSGLSLQYQQDGWYVFGQAKYT 713

Query: 721 GRRYTTLVNDDALGGYTLFNAGAGMTFASTTWLKKPTVRLNVYNLFDKQYLNLNGGSGSQ 780
           GRRYTTLVNDDALGGYTLFNAGAGMTFASTTWLKKPTVRLNVYNLFDKQYLNLNGGSGSQ
Sbjct: 714 GRRYTTLVNDDALGGYTLFNAGAGMTFASTTWLKKPTVRLNVYNLFDKQYLNLNGGSGSQ 773

Query: 781 FTTNAVAVNGIPGTDPSLYIGAPRTFTVTLTADF 814
           FTTNAVAVNGIPGTDPSLYIGAPRTFTVTLTADF
Sbjct: 774 FTTNAVAVNGIPGTDPSLYIGAPRTFTVTLTADF 807


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.133    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,468,837
Number of extensions: 103863
Number of successful extensions: 300
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 302
Number of HSP's successfully gapped: 2
Length of query: 814
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 721
Effective length of database: 1,179,515
Effective search space: 850430315
Effective search space used: 850430315
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 135 (56.6 bits)