BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0115.p
         (314 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310909|ref|YP_003775001.1| serine O-acetyltransferase [Her...   580   e-167
gi|300311650|ref|YP_003775742.1| serine O-acetyltransferase [Her...   308   3e-85
gi|300311189|ref|YP_003775281.1| serine O-acetyltransferase [Her...   139   4e-34

>gi|300310909|ref|YP_003775001.1| serine O-acetyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 311

 Score =  580 bits (1496), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 287/314 (91%), Positives = 298/314 (94%), Gaps = 3/314 (0%)

Query: 1   MEPTHIPELNALADSVESASLGLSAVVAGLRTSREVTNKIRYRGEIRELPSREAMQKLLQ 60
           M+ ++ PEL+AL D+   A LGLSAVVAGLRTSREVTNKIRYRGEIRELPSREAM KLLQ
Sbjct: 1   MDTSNTPELSALVDT---AGLGLSAVVAGLRTSREVTNKIRYRGEIRELPSREAMHKLLQ 57

Query: 61  HLQAALFPTHYGHTDLSDETIDYFVGSQLNAALSILREQVRRSLYFSSDVEEDGLLRERA 120
           HLQAALFPTHYGHTDLSDETIDYFVGSQLN  LSIL+EQVRRSLYFSSD++ED  LRE+A
Sbjct: 58  HLQAALFPTHYGHTDLSDETIDYFVGSQLNTGLSILKEQVRRSLYFSSDLQEDAPLREQA 117

Query: 121 TAITRDFAHQLPGVRDILVSDIQAAYHGDPAASSISEILLCYPGTTAIIYHRLAHALHQL 180
             ITRDFAHQLP VRD+LVSDIQAAYHGDPAASSISEILLCYPGTTAIIYHRLAHALHQL
Sbjct: 118 ARITRDFAHQLPAVRDVLVSDIQAAYHGDPAASSISEILLCYPGTTAIIYHRLAHALHQL 177

Query: 181 GAPLLARLIADIAHSATGIDIHPAAQIGPSFFIDHGTGVVIGETTIIGRNVRLYQAVTLG 240
           GAPLLARLIADIAHSATGIDIHPAAQIGPSFFIDHGTGVVIGETTIIGRNVRLYQAVTLG
Sbjct: 178 GAPLLARLIADIAHSATGIDIHPAAQIGPSFFIDHGTGVVIGETTIIGRNVRLYQAVTLG 237

Query: 241 AKRFPQEPDGSLVKGIARHPIVEDDVVVYAGATLLGRITIGRGSVIGGNVWLTHSVPAGS 300
           AKRFPQEPDGSLVKGI RHPIVEDDVVVYAGATLLGRITIGRGSVIGGNVWLTHSVPAGS
Sbjct: 238 AKRFPQEPDGSLVKGIPRHPIVEDDVVVYAGATLLGRITIGRGSVIGGNVWLTHSVPAGS 297

Query: 301 NISQAEMLSDCRQP 314
           N+SQAEMLSDCRQP
Sbjct: 298 NVSQAEMLSDCRQP 311


>gi|300311650|ref|YP_003775742.1| serine O-acetyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 307

 Score =  308 bits (790), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 161/267 (60%), Positives = 197/267 (73%), Gaps = 2/267 (0%)

Query: 47  RELPSREAMQKLLQHLQAALFPTHYGHTDLSDETIDYFVGSQLNAALSILREQVRRSLYF 106
           RE PSR+A+  ++  L+  LFP   G  DL  E+ ++ V   L+AAL  L  QVR  L +
Sbjct: 33  REFPSRDALDGIVTTLKGVLFPMRLGPPDLRQESENFHVAHALDAALHALLGQVRLELKY 92

Query: 107 SSDVEEDGL--LRERATAITRDFAHQLPGVRDILVSDIQAAYHGDPAASSISEILLCYPG 164
           S+ +       L + A +ITR F   LP +R  L +D+ AAY GDPAA S+ E+LLCYPG
Sbjct: 93  SAGLSGRPTPNLEQDAISITRAFGASLPQIRSQLDTDVLAAYQGDPAARSVDEVLLCYPG 152

Query: 165 TTAIIYHRLAHALHQLGAPLLARLIADIAHSATGIDIHPAAQIGPSFFIDHGTGVVIGET 224
             A+I++RLAH L+QLG PLLAR+IA++AH+ATGIDIHP AQIG  FFIDHGTGVVIGET
Sbjct: 153 ALAMIHYRLAHRLYQLGLPLLARIIAELAHAATGIDIHPGAQIGTGFFIDHGTGVVIGET 212

Query: 225 TIIGRNVRLYQAVTLGAKRFPQEPDGSLVKGIARHPIVEDDVVVYAGATLLGRITIGRGS 284
            +IG NVR+YQAVTLGAKRFP + DG L KG ARHPIVEDDVV+YAGAT+LGRI +GRG+
Sbjct: 213 AVIGNNVRIYQAVTLGAKRFPTDADGKLEKGRARHPIVEDDVVIYAGATILGRIRLGRGA 272

Query: 285 VIGGNVWLTHSVPAGSNISQAEMLSDC 311
           VIGGNVWLTH VPAG++ISQA    D 
Sbjct: 273 VIGGNVWLTHDVPAGAHISQAASREDS 299


>gi|300311189|ref|YP_003775281.1| serine O-acetyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 250

 Score =  139 bits (349), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 76/164 (46%), Positives = 95/164 (57%), Gaps = 8/164 (4%)

Query: 138 LVSDIQAAYHGDPAASSISEILLCYPGTTAIIYHRLAHALHQLGAPLLARLIADIAHSAT 197
           L  DI +    DPAA +  E+L CYPG  A+I HR A A  Q     L R I+ +    T
Sbjct: 5   LREDIASIRARDPAARNSWEVLTCYPGLHALILHRWAKACWQAQLKWLGRFISQLGRMLT 64

Query: 198 GIDIHPAAQIGPSFFIDHGTGVVIGETTIIGRNVRLYQAVTLGAKRFPQEPDGSLVKGIA 257
           GI+IHP A IG   FIDHG GVVIGET I+G +  +YQ VTLG          SLVKG  
Sbjct: 65  GIEIHPGATIGRRVFIDHGMGVVIGETAIVGDDSTIYQGVTLGGT--------SLVKGAK 116

Query: 258 RHPIVEDDVVVYAGATLLGRITIGRGSVIGGNVWLTHSVPAGSN 301
           RHP +   V++ AGA +LG  T+G G+ +G N  +T  VPAG+ 
Sbjct: 117 RHPTLGRGVIIGAGAKVLGGFTVGDGAKVGSNAVVTKEVPAGTT 160


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,047,325
Number of extensions: 46848
Number of successful extensions: 165
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 3
Length of query: 314
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 229
Effective length of database: 1,217,395
Effective search space: 278783455
Effective search space used: 278783455
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)