BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0108.p
         (238 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310917|ref|YP_003775009.1| hypothetical protein Hsero_1588...   394   e-111

>gi|300310917|ref|YP_003775009.1| hypothetical protein Hsero_1588
           [Herbaspirillum seropedicae SmR1]
          Length = 240

 Score =  394 bits (1011), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 196/238 (82%), Positives = 214/238 (89%)

Query: 1   MSNDRIPSPESLDSFGAHLFPARRHSAARGTVAGLIAVISWFAFVAQTDITINRLLARGG 60
           M++++ P PESLDSF   L+P RR S+A   +A LIA ISWFAFVAQTDITI+RLLARGG
Sbjct: 1   MNHEQFPDPESLDSFAERLYPERRQSSAARALACLIASISWFAFVAQTDITISRLLARGG 60

Query: 61  GILDGLDRLTMYLTNLTILMSALCFTSLALSLRSPMSRFFRQPTVISAVVTYLAFVGIAY 120
           G+LDGLDRLTMYLTNLTILMSALCFTSLALSL++P+SRFFRQP VI+AVVTYLAFVGIAY
Sbjct: 61  GVLDGLDRLTMYLTNLTILMSALCFTSLALSLKTPLSRFFRQPAVITAVVTYLAFVGIAY 120

Query: 121 NLLLRHLWTPTGFRALVNESLHTVVPLLAIVYWIFFVPVFQASLKKALLWLVYPLGYLMV 180
           NLLLR LWTPTGFRALVNESLHTVVPLLAIVYWIFFVPVFQAS +KALLWL YPLGYL +
Sbjct: 121 NLLLRQLWTPTGFRALVNESLHTVVPLLAIVYWIFFVPVFQASWRKALLWLAYPLGYLFI 180

Query: 181 TLWRGALSGFYPYPFIDVNALGYPRVILNATLLFGAFVGLMALFIAVNRSGKPVLQGK 238
           TLWRGALSGFYPYPFIDVNALGY RV +NA+LL   F+GLMALFIAVNRSGKPVL  K
Sbjct: 181 TLWRGALSGFYPYPFIDVNALGYLRVAVNASLLLVGFLGLMALFIAVNRSGKPVLLRK 238


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.143    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 686,138
Number of extensions: 25776
Number of successful extensions: 100
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 156
Effective length of database: 1,231,600
Effective search space: 192129600
Effective search space used: 192129600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 129 (54.3 bits)