BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0105.p
         (105 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310922|ref|YP_003775014.1| formyltetrahydrofolate deformyl...   222   4e-60
gi|300310510|ref|YP_003774602.1| phosphoribosylglycinamide formy...    85   1e-18

>gi|300310922|ref|YP_003775014.1| formyltetrahydrofolate deformylase
           [Herbaspirillum seropedicae SmR1]
          Length = 289

 Score =  222 bits (566), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 105/105 (100%), Positives = 105/105 (100%)

Query: 1   MCEALRGRAINIHHSFLPSFKGAKPYYQAHDRGVKLIGATAHFVTGDLDEGPIIEQGVER 60
           MCEALRGRAINIHHSFLPSFKGAKPYYQAHDRGVKLIGATAHFVTGDLDEGPIIEQGVER
Sbjct: 185 MCEALRGRAINIHHSFLPSFKGAKPYYQAHDRGVKLIGATAHFVTGDLDEGPIIEQGVER 244

Query: 61  VDHSMGPDTLTAIGRDIECVVLARAVKWFTEHRILLNGHKTVIFN 105
           VDHSMGPDTLTAIGRDIECVVLARAVKWFTEHRILLNGHKTVIFN
Sbjct: 245 VDHSMGPDTLTAIGRDIECVVLARAVKWFTEHRILLNGHKTVIFN 289


>gi|300310510|ref|YP_003774602.1| phosphoribosylglycinamide
           formyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 203

 Score = 84.7 bits (208), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/99 (45%), Positives = 57/99 (57%)

Query: 2   CEALRGRAINIHHSFLPSFKGAKPYYQAHDRGVKLIGATAHFVTGDLDEGPIIEQGVERV 61
            E  +GR +NIH S LPSF G   + QA   GVKL GAT HFVT DLD GPI+ Q    V
Sbjct: 98  VEHYQGRMLNIHPSLLPSFPGLATHRQALAAGVKLHGATVHFVTPDLDHGPIVAQAAVPV 157

Query: 62  DHSMGPDTLTAIGRDIECVVLARAVKWFTEHRILLNGHK 100
                 + L     + E V+  RAV+WF + R+ L+GH+
Sbjct: 158 QEEDSEEALAERVLEQEHVIYPRAVRWFIDGRLRLDGHR 196


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.141    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 347,392
Number of extensions: 13611
Number of successful extensions: 41
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 2
Length of query: 105
Length of database: 1,619,870
Length adjustment: 72
Effective length of query: 33
Effective length of database: 1,278,950
Effective search space: 42205350
Effective search space used: 42205350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 123 (52.0 bits)