BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0103.p
         (154 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311014|ref|YP_003775106.1| leucine-responsive regulatory D...    76   1e-15
gi|300309515|ref|YP_003773607.1| leucine-responsive regulatory p...    71   5e-14
gi|300313266|ref|YP_003777358.1| AsnC family transcription regul...    54   4e-09

>gi|300311014|ref|YP_003775106.1| leucine-responsive regulatory
           DNA-binding transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 162

 Score = 75.9 bits (185), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 81/139 (58%), Gaps = 4/139 (2%)

Query: 7   LDDVDRQIISELQMNARASVADMARRLDLARTTIIARVERLEKSGIIAGYTLKLGSDVLD 66
           LD +D +I++ LQ + R S+ ++  ++ L+ T  I RV R+E+ G+I GY  ++  + L 
Sbjct: 11  LDKLDHRILAVLQKDGRISMKELGEQVGLSVTPCIERVRRMERDGVITGYYARVNPESLG 70

Query: 67  SSLQAYVGITLQPKAG---KDVVRRFNRMPEVHQLCAVSGEFDYVAWLRVSTPEQLDRIL 123
           ++L  +V ITL  K+G   +   R   R+PEV +   VSG+FDY+   R+    +  ++L
Sbjct: 71  ATLLVFVEITLNHKSGNMFEQFRREVLRIPEVQECHLVSGDFDYLIKARIRGMAEYRKLL 130

Query: 124 DEI-GEMDGVIKTTTSVVL 141
            +I  ++ G  ++ + VV+
Sbjct: 131 GDILLQLPGAAQSKSYVVM 149


>gi|300309515|ref|YP_003773607.1| leucine-responsive regulatory
           protein [Herbaspirillum seropedicae SmR1]
          Length = 154

 Score = 70.9 bits (172), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 77/140 (55%), Gaps = 6/140 (4%)

Query: 7   LDDVDRQIISELQMNARASVADMARRLDLARTTIIARVERLEKSGIIAGYTLKLGSDVLD 66
           LD + ++I++ELQ + R S  D+A R++L+    + RV +L+++G I GY  +L  ++LD
Sbjct: 4   LDKISKKILAELQNDGRISNVDLAARVNLSPAACLERVRKLQEAGYILGYAAQLNPELLD 63

Query: 67  SSLQAYVGITLQPKAGKDVVRRFNR----MPEVHQLCAVSGEFDYVAWLRVSTPEQLDRI 122
            SL  ++ + L  +   DV   F +    +PE+ +   V+G FDY+   RV         
Sbjct: 64  VSLLVFIEVVLD-RTTPDVFAEFKKSVQSIPEIMECHMVAGGFDYLVKSRVKDMNAYREF 122

Query: 123 LDE-IGEMDGVIKTTTSVVL 141
           L + + ++ GV +T T  V+
Sbjct: 123 LGKSLLQLKGVRETHTYAVM 142


>gi|300313266|ref|YP_003777358.1| AsnC family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 159

 Score = 54.3 bits (129), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 78/144 (54%), Gaps = 10/144 (6%)

Query: 7   LDDVDRQIISELQMNARASVADMARRLDLARTTIIARVERLEKSGIIAGYTLKLGSDVLD 66
           LD  D +I++ LQ N+  S  ++A R++L+ +  +ARV+RLE  GII+ Y       +L 
Sbjct: 3   LDTTDLRILNILQENSSISNLELASRINLSPSPTLARVKRLESEGIISRYVALADPHLLG 62

Query: 67  SSLQAYVGITLQPKAGKDVVRRF----NRMPEVHQLCAVSGEFDYVAWLRVSTPEQL--- 119
             +  +V + L+ + G + + +F    +   EV ++  ++G+ DY+  LR+  P+ L   
Sbjct: 63  LKVNVFVKVILE-RQGAEALAQFETAVSAFDEVMEVYLMTGDEDYL--LRIVVPDLLTLE 119

Query: 120 DRILDEIGEMDGVIKTTTSVVLAR 143
             I+D + ++ G+    +S  L +
Sbjct: 120 HFIVDHLTKIPGIKNIRSSFALKQ 143


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 472,100
Number of extensions: 18824
Number of successful extensions: 90
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 5
Length of query: 154
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 77
Effective length of database: 1,255,275
Effective search space: 96656175
Effective search space used: 96656175
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)