BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0098.p (219 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312809|ref|YP_003776901.1| glutamine ABC transporter perme... 148 4e-37 gi|300313149|ref|YP_003777241.1| glutamate/aspartate ABC transpo... 138 4e-34 gi|300313167|ref|YP_003777259.1| amino acid ABC transporter perm... 130 6e-32 gi|300310827|ref|YP_003774919.1| amino acid ABC transporter perm... 129 3e-31 gi|300311602|ref|YP_003775694.1| glutamine ABC transporter perme... 121 5e-29 >gi|300312809|ref|YP_003776901.1| glutamine ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 218 Score = 148 bits (373), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 83/200 (41%), Positives = 123/200 (61%) Query: 3 SWDFGMLWQYRGIIVSGVITTVLFTAVVVITGLLVGVLVGLGRVSSNRTLCGVLRGYVEV 62 +DF ++ ++ G TVL TA ++ G LVG+L GL R N L G+ GYVE Sbjct: 2 DFDFSVITDSLPALLEGAKVTVLITAAGLVGGTLVGLLAGLMRAYGNTLLKGIGFGYVEF 61 Query: 63 FRCTPVLVQLIWFYYALPVLLGIELSPWMAAALALTLYGGAFYSEIVRGGIVSIDAGQTE 122 R TP++VQ+++ Y+ALPVLLGI + P AA ++ + GA+ +EIVRG +S+ G E Sbjct: 62 VRGTPIVVQVMFIYFALPVLLGIRVDPMTAAVTSIVVNSGAYIAEIVRGAFLSVPRGLRE 121 Query: 123 AGQAIGMTRWQVMRRLILPQAFRRMTPPLVSQSIMQLKNTSLLSVLAVPDLVYQGQLIAH 182 AG A+G+ W+V+ +I P A RRM P + +Q I+ LK+TSL V+ V +L QGQ I Sbjct: 122 AGLALGLPVWRVLAFVIGPVAIRRMVPAMGNQFIVSLKDTSLFIVIGVGELTRQGQEIMA 181 Query: 183 DTYRPLEIYTLVAVLYFIIL 202 +R +EI+ VA +Y ++ Sbjct: 182 ANFRAVEIWIAVAAIYLCMI 201 >gi|300313149|ref|YP_003777241.1| glutamate/aspartate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 231 Score = 138 bits (347), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 80/223 (35%), Positives = 134/223 (60%), Gaps = 14/223 (6%) Query: 3 SWDFGML---WQYRGIIVSGVITTVLFTAVVVITGLLVGVLVGLGRVSSNRTLCGVLRGY 59 ++DF ++ W Y + +G+ T++ T + G+++G L+ + R+SSN+ L + Y Sbjct: 4 NFDFDVIQRSWFY--LFTTGLKFTLILTFSAMAGGIILGTLLAMMRLSSNKPLSFIATTY 61 Query: 60 VEVFRCTPVLVQLIWFYYALPV----LLG----IELSPWMAAALALTLYGGAFYSEIVRG 111 V + R P+++ + WFY+ +P ++G I++ + +A + L+ A+Y EI+R Sbjct: 62 VNLIRSIPLVLVIFWFYFLVPFIGAWMIGASEPIQVGAFQSALITFILFEAAYYCEIMRS 121 Query: 112 GIVSIDAGQTEAGQAIGMTRWQVMRRLILPQAFRRMTPPLVSQSIMQLKNTSLLSVL-AV 170 GI SI GQ AG AIGM WQ+M ++LPQAFR MTP L++Q+I+ ++ SL+ VL +V Sbjct: 122 GIQSIPRGQVFAGYAIGMNYWQMMGNVVLPQAFRNMTPILLTQTIVLFQDVSLVYVLGSV 181 Query: 171 PDLVYQGQLIAHDTYRPLEIYTLVAVLYFIILFPATVVAKRLE 213 PD V IA R +E+Y VAV+YF++ F + + KR + Sbjct: 182 PDFVTSASKIAQRDGRLVEMYLFVAVVYFVLSFGLSTLVKRFQ 224 >gi|300313167|ref|YP_003777259.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 216 Score = 130 bits (328), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 70/191 (36%), Positives = 114/191 (59%), Gaps = 1/191 (0%) Query: 23 TVLFTAVVVITGLLVGVLVGLGRVSSNRTLCGVLRGYVEVFRCTPVLVQLIWFYYALPVL 82 TV+ + V + G + G ++ L RVS N L G+ GY++V + P+LV L Y+ L + Sbjct: 19 TVVLSLVAFVFGGVAGFVIALWRVSPNAVLRGIASGYIQVVQGIPLLVILFVAYFGLAIA 78 Query: 83 LGIELSPWMAAALALTLYGGAFYSEIVRGGIVSIDAGQTEAGQAIGMTRWQVMRRLILPQ 142 G +L+P +AA ++ +Y AF EI RG I ++ Q EA + +G R++ + ++ILPQ Sbjct: 79 -GFKLTPLVAAGISFAIYCAAFLGEIWRGCIQAVPKTQWEASECLGFNRFEQLTKVILPQ 137 Query: 143 AFRRMTPPLVSQSIMQLKNTSLLSVLAVPDLVYQGQLIAHDTYRPLEIYTLVAVLYFIIL 202 A + TPP V + +KNTSL SV+ DL GQ+I + T++P ++ VA++YF + Sbjct: 138 AVKIATPPTVGFMVQIVKNTSLASVIGFVDLSRAGQIINNSTFQPFTVFGCVALIYFCLC 197 Query: 203 FPATVVAKRLE 213 FP + ++K E Sbjct: 198 FPLSALSKHFE 208 >gi|300310827|ref|YP_003774919.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 231 Score = 129 bits (323), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 67/197 (34%), Positives = 118/197 (59%), Gaps = 1/197 (0%) Query: 2 YSWDFGMLWQYRGIIVSGVITTVLFTAVVVITGLLVGVLVGLGRVSSNRTLCGVLRGYVE 61 Y + F ++Q+ ++ G + T+ +A+ +I GL VG+ + + ++ + YVE Sbjct: 3 YDFQFAFIFQHLDQLLVGALLTIRLSALSMICGLAVGIFGAIISIHGSKPARLAVTSYVE 62 Query: 62 VFRCTPVLVQLIWFYYALPVLLGIELSPWMAAALALTLYGGAFYSEIVRGGIVSIDAGQT 121 + R TP LVQL ++ LP + G+++ +AA +A+T+ GA+ +EIVR G+++I Q Sbjct: 63 LIRSTPFLVQLFIIFFGLPSI-GVQVDANIAALVAMTVNLGAYSTEIVRAGMMAIHPSQI 121 Query: 122 EAGQAIGMTRWQVMRRLILPQAFRRMTPPLVSQSIMQLKNTSLLSVLAVPDLVYQGQLIA 181 EA QA+ MTRWQV+R ++L A ++ P L SQ + + +S++S ++ +L L+ Sbjct: 122 EAAQALAMTRWQVIRHVVLTPALEKVYPALASQFTLMMLASSIVSAISAEELTATANLLD 181 Query: 182 HDTYRPLEIYTLVAVLY 198 +T+R EIY +V VLY Sbjct: 182 AETFRSFEIYLVVMVLY 198 >gi|300311602|ref|YP_003775694.1| glutamine ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 221 Score = 121 bits (303), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 86/210 (40%), Positives = 137/210 (65%), Gaps = 2/210 (0%) Query: 5 DFGMLWQYRGIIVSGVITTVLFTAVVVITGLLVGVLVGLGRVS-SNRTLCGVLRGYVEVF 63 DF +W+ +V G + TV TA ++ G ++G+LVGLGR+S R + G+ Y+ + Sbjct: 4 DFSGVWESWPSLVHGTLVTVEITAASLVVGCVLGLLVGLGRLSPQRRVIYGLCTIYLTLV 63 Query: 64 RCTPVLVQLIWFYYALPVLLGIELSPWMAAALALTLYGGAFYSEIVRGGIVSIDAGQTEA 123 R TP+LVQL +++ LP +G+ L ++ L L +Y GA+ SEIVRG I SI+ GQ EA Sbjct: 64 RGTPLLVQLFLWFFGLP-HVGVILPAYVCGILGLGIYSGAYVSEIVRGAIQSIERGQMEA 122 Query: 124 GQAIGMTRWQVMRRLILPQAFRRMTPPLVSQSIMQLKNTSLLSVLAVPDLVYQGQLIAHD 183 +++G+ MRR+ILPQAF RM PPL ++ I +KN++L+S+L + DL+++G+ I Sbjct: 123 ARSLGLPYRMAMRRVILPQAFVRMIPPLGNEFIALIKNSALVSLLTIADLMHEGEKIISV 182 Query: 184 TYRPLEIYTLVAVLYFIILFPATVVAKRLE 213 TYR LE Y +A++Y ++ T++ +R+E Sbjct: 183 TYRSLETYLAIALIYLLLTSVTTLILRRVE 212 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.329 0.143 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 598,487 Number of extensions: 21018 Number of successful extensions: 167 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 145 Number of HSP's successfully gapped: 21 Length of query: 219 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 137 Effective length of database: 1,231,600 Effective search space: 168729200 Effective search space used: 168729200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 128 (53.9 bits)