BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0097.p (257 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPa... 272 2e-74 gi|300311603|ref|YP_003775695.1| glutamine ABC transporter ATPas... 261 3e-71 gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPas... 256 1e-69 gi|300309583|ref|YP_003773675.1| amino acid ABC transporter ATPa... 252 2e-68 gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPa... 240 8e-65 >gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 272 bits (696), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 141/247 (57%), Positives = 177/247 (71%), Gaps = 8/247 (3%) Query: 6 MISVRGLKKSFGDQTVLRDINLEIAKGEVVALIGPSGSGKSTLLRCLNLLAAPNHGVIKI 65 MI V+ + K FG VL+D++L +A+GEVV LIGPSGSGKST+LRC+N L + G I I Sbjct: 1 MIEVKRISKCFGRHEVLKDVSLSVAQGEVVCLIGPSGSGKSTVLRCINGLESYERGDILI 60 Query: 66 GGECFDFDQTVPEKLSDRTMARFRAQTGMVFQHFNLFPHMTVVQNVMEGPVTVLRRPKAH 125 G+ D D P+ + R R + GMVFQ FNLFPH TV++NV EGP+ V +A Sbjct: 61 DGQRVDRDG--PD------IHRLRTRVGMVFQRFNLFPHRTVLENVTEGPIYVNGLARAQ 112 Query: 126 AHAQAMKLLAQVGLAEKAEMYPEKLSGGQKQRVAIARALAMDPEVMLFDEATSALDPELV 185 A ++AM LL +VGLA + + YP +LSGGQ+QRVAIAR+LAM PE +LFDE TSALDPELV Sbjct: 113 ARSEAMSLLDKVGLAARCDAYPAQLSGGQQQRVAIARSLAMQPEAILFDEPTSALDPELV 172 Query: 186 GEVLNVIKQLAERGMTMILVTHEIAFAREVADKVIFMRDGVVVEAGPPAQVIDAPTQAAT 245 GEVL V++ LA GMTMI+VTHE+ FAREVAD+V F+ G +VE+G AQV+ P A T Sbjct: 173 GEVLAVMRTLAADGMTMIVVTHEMGFAREVADRVCFLHSGSIVESGAAAQVLAEPQHART 232 Query: 246 QAFLARV 252 Q FL RV Sbjct: 233 QDFLRRV 239 >gi|300311603|ref|YP_003775695.1| glutamine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 261 bits (668), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 142/250 (56%), Positives = 178/250 (71%), Gaps = 6/250 (2%) Query: 1 MSKPIMISVRGLKKSFGDQTVLRDINLEIAKGEVVALIGPSGSGKSTLLRCLNLLAAPNH 60 M++PI + V GL+KSFG VL+D++L +A +VV +IGPSGSGKST LRCLN L Sbjct: 1 MTEPI-VEVSGLRKSFGAHVVLKDLDLSVAPSQVVVVIGPSGSGKSTFLRCLNGLEKAEG 59 Query: 61 GVIKIGGE-CFDFDQTVPEKLSDRTMARFRAQTGMVFQHFNLFPHMTVVQNVMEGPVTVL 119 G +K+ G + + +PE + D RA+ GMVFQ FNLFPH+TV+ N+ P + Sbjct: 60 GTVKVCGRPVVEGGRMMPEAMLDL----LRAEVGMVFQSFNLFPHLTVLDNITLAPTCLR 115 Query: 120 RRPKAHAHAQAMKLLAQVGLAEKAEMYPEKLSGGQKQRVAIARALAMDPEVMLFDEATSA 179 + A QA++LL +VGLA KA+ YP LSGGQKQRVAIARALAM+P+VMLFDE TSA Sbjct: 116 GMSRKAAQQQALQLLEKVGLAHKAKAYPGTLSGGQKQRVAIARALAMEPQVMLFDEPTSA 175 Query: 180 LDPELVGEVLNVIKQLAERGMTMILVTHEIAFAREVADKVIFMRDGVVVEAGPPAQVIDA 239 LDPELVGEVL VI+ LA GMTMI+VTHE+ FAREVAD V+ M G +VEAGPP + A Sbjct: 176 LDPELVGEVLQVIRALAAEGMTMIIVTHEMGFAREVADVVVVMDHGSIVEAGPPGAIFTA 235 Query: 240 PTQAATQAFL 249 P QA T++FL Sbjct: 236 PQQARTRSFL 245 >gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 240 Score = 256 bits (655), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 138/249 (55%), Positives = 174/249 (69%), Gaps = 12/249 (4%) Query: 6 MISVRGLKKSFGDQTVLRDINLEIAKGEVVALIGPSGSGKSTLLRCLNLLAAPNHGVIKI 65 MI V L+K FG +LR I+ EI EVV +IGPSGSGKST LRCLN L + G I I Sbjct: 1 MIKVNQLQKRFGQAHILRGIDCEIRAREVVCVIGPSGSGKSTFLRCLNGLEEVSDGDIFI 60 Query: 66 GGECFDFDQTVPEKLSDR--TMARFRAQTGMVFQHFNLFPHMTVVQNVMEGPVTVLRRPK 123 G KL+D + RA+ GMVFQ FNLFPHMTV++N++ P+ V + + Sbjct: 61 EGV----------KLNDPKVNLNALRAELGMVFQRFNLFPHMTVLENLIMAPMQVKKLSR 110 Query: 124 AHAHAQAMKLLAQVGLAEKAEMYPEKLSGGQKQRVAIARALAMDPEVMLFDEATSALDPE 183 A A KLL +VGL +K + +P +LSGGQ+QRVAIARALAM+P+VMLFDE TSALDPE Sbjct: 111 REAVLVAEKLLQKVGLLDKIDAFPNQLSGGQQQRVAIARALAMEPKVMLFDEPTSALDPE 170 Query: 184 LVGEVLNVIKQLAERGMTMILVTHEIAFAREVADKVIFMRDGVVVEAGPPAQVIDAPTQA 243 LVGEVL V+KQLAE GMTM++VTHE+ FAREV+D+V+F+ GV++E GPP QV+ P Sbjct: 171 LVGEVLTVMKQLAEEGMTMVVVTHEMGFAREVSDRVLFIDQGVIMEEGPPQQVLGDPHHE 230 Query: 244 ATQAFLARV 252 T+ FL +V Sbjct: 231 RTRDFLRKV 239 >gi|300309583|ref|YP_003773675.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 252 bits (643), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 128/245 (52%), Positives = 170/245 (69%), Gaps = 9/245 (3%) Query: 6 MISVRGLKKSFGDQTVLRDINLEIAKGEVVALIGPSGSGKSTLLRCLNLLAAPNHGVIKI 65 ++ ++G+ K FG TVLR ++ ++A+GEVVA+IG SGSGKST LRC+N L + G I + Sbjct: 4 VVELQGVHKRFGSNTVLRGVSFQVARGEVVAIIGKSGSGKSTALRCINRLEQIDAGQISV 63 Query: 66 GGECFDFDQTVPEKLSDRTMARFRAQTGMVFQHFNLFPHMTVVQNVMEGPVTVLRRPKAH 125 G + + R G+VFQ +NLFPH+TV+QN+ GP V R P Sbjct: 64 CGHAL--------HAAGLDLRGLRRDVGIVFQGYNLFPHLTVLQNITLGPTAVKRMPADQ 115 Query: 126 AHAQAMKLLAQVGLAEKAEMYPEKLSGGQKQRVAIARALAMDPEVMLFDEATSALDPELV 185 A A ++LA+VGLA+KA YPE+LSGGQ+QRVAIAR+LA+ P++MLFDE TSALDPEL Sbjct: 116 AQTLAQQVLARVGLADKAGAYPEQLSGGQQQRVAIARSLALQPQLMLFDEVTSALDPELT 175 Query: 186 GEVLNVIKQLAERGMTMILVTHEIAFAREVADKVIFMRDGVVVEAGPPAQVIDAPTQAAT 245 GEVL V++Q+A GMTMILVTHE+AFAR VAD+VIFM G V E G P +++DAP Sbjct: 176 GEVLKVMEQMASEGMTMILVTHEMAFARRVADQVIFMHQGQVWEQGGP-EILDAPVTPEL 234 Query: 246 QAFLA 250 ++F+ Sbjct: 235 RSFVG 239 >gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 240 bits (613), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 125/245 (51%), Positives = 166/245 (67%), Gaps = 7/245 (2%) Query: 6 MISVRGLKKSFGDQTVLRDINLEIAKGEVVALIGPSGSGKSTLLRCLNLLAAPNHGVIKI 65 ++ ++ L KSFG VL ++L++ KG++VA+IG SGSGKSTLLRCLN L + G I++ Sbjct: 4 IVKIKDLHKSFGSNKVLNGVSLDVQKGQMVAIIGKSGSGKSTLLRCLNGLEKVDAGDIQV 63 Query: 66 GGECFDFDQTVPEKLSDRTMARFRAQTGMVFQHFNLFPHMTVVQNVMEGPVTVLRRPKAH 125 G D P+KL+ R + R Q G+VFQ +NLFPH+TV +N+ T+ + Sbjct: 64 CGH----DIHHPDKLNLREL---RKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTEQ 116 Query: 126 AHAQAMKLLAQVGLAEKAEMYPEKLSGGQKQRVAIARALAMDPEVMLFDEATSALDPELV 185 A A K+L VGL K + YPE+LSGGQ QRVAIAR+LAM PE+MLFDE TSALDPEL Sbjct: 117 AKTIAHKVLQLVGLENKKDAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELT 176 Query: 186 GEVLNVIKQLAERGMTMILVTHEIAFAREVADKVIFMRDGVVVEAGPPAQVIDAPTQAAT 245 EVL V++ LA GMTM+LVTHE+AFAR++AD ++FM G V E GPP ++ P A Sbjct: 177 AEVLKVMEDLARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWEIGPPDELFSHPKTAEL 236 Query: 246 QAFLA 250 Q F++ Sbjct: 237 QKFVS 241 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.135 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 762,219 Number of extensions: 30599 Number of successful extensions: 577 Number of sequences better than 1.0e-08: 129 Number of HSP's gapped: 330 Number of HSP's successfully gapped: 143 Length of query: 257 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 174 Effective length of database: 1,226,865 Effective search space: 213474510 Effective search space used: 213474510 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)