BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0090.p
         (460 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310930|ref|YP_003775022.1| multicopper oxidase [Herbaspiri...   853   0.0  

>gi|300310930|ref|YP_003775022.1| multicopper oxidase
           [Herbaspirillum seropedicae SmR1]
          Length = 462

 Score =  853 bits (2204), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/463 (90%), Positives = 430/463 (92%), Gaps = 4/463 (0%)

Query: 1   MNPNDKARRHFLQGAALAVTAGAVSRAGAAGLPEAPLQTSAATQPPLQPATGRPYQPVVT 60
           M+  DK RR FLQGAALAVTAGAVSRAGAA LPEAPLQ S ATQPPL PA GRPYQPVVT
Sbjct: 1   MSTPDKQRRSFLQGAALAVTAGAVSRAGAAALPEAPLQASPATQPPLHPANGRPYQPVVT 60

Query: 61  LNGWTLPWRMKNGVKEFHLIAEAVEREIAPGMKARLWGYNGQSPGPTIEVVEGDKVRIFV 120
           LNGW+LPWRM NGVKEFHL+AE V REIAPGMKARLWGYNGQSPGPTIEVVEGD+VRIFV
Sbjct: 61  LNGWSLPWRMNNGVKEFHLVAEPVVREIAPGMKARLWGYNGQSPGPTIEVVEGDRVRIFV 120

Query: 121 TNKLPEATSVHWHGQRLPNGMDGVSGLTQAAIPPGKTYVYEFTAKRAGTFMYHPHADEMV 180
           TNKLPEATSVHWHGQRLPNGMDGVSGLTQ AIPPGKTYVYEFTA+RAGTFMYHPHADEMV
Sbjct: 121 TNKLPEATSVHWHGQRLPNGMDGVSGLTQPAIPPGKTYVYEFTARRAGTFMYHPHADEMV 180

Query: 181 QMAMGMMGFWVTHPRDPGVMRVDRDFVFLMNAYDIAPGASVPKVSTMLDFNLWTWNSRAF 240
           QMAMGMMGFWVTHP+DPG MRVDRDFVFLMNAYDIAPGASVPKVSTMLDFNLWTWNSRAF
Sbjct: 181 QMAMGMMGFWVTHPKDPGFMRVDRDFVFLMNAYDIAPGASVPKVSTMLDFNLWTWNSRAF 240

Query: 241 PGIDPLVVRQNDRVRIRVGNLTMTNHPLHLHGHEFSVTGTDGGWVPPAARWPEVTTDIAV 300
           PGIDPLVVRQNDRVRIRVGNLTMTNHPLHLHGHEFSVTGTDGGWVPPAARWPEVTTDIAV
Sbjct: 241 PGIDPLVVRQNDRVRIRVGNLTMTNHPLHLHGHEFSVTGTDGGWVPPAARWPEVTTDIAV 300

Query: 301 GQMRAIEFDATEEGDWALHCHKAHHTMNAMGHDLPTMIGVDQSKVVSKISRLIPDYMAMG 360
           GQMRAIEFDATEEGDWALHCHKAHHTMNAMGHDLPTMIGVDQSKV+ KI+RLIPDYMAMG
Sbjct: 301 GQMRAIEFDATEEGDWALHCHKAHHTMNAMGHDLPTMIGVDQSKVLDKITRLIPDYMAMG 360

Query: 361 DKGGSMGEMEMPLPDNTLPMMTGRGPYGPIEMGGMFSTVKVRRNLARDDYRDPGWYRAPA 420
           DKGGSMGEMEMPLP+NTLPMMTGRGPYGPIEMGGMFSTVKVR+ LARDDYRDPGWYRAPA
Sbjct: 361 DKGGSMGEMEMPLPENTLPMMTGRGPYGPIEMGGMFSTVKVRKQLARDDYRDPGWYRAPA 420

Query: 421 GTVAREWQGEMPEARRAAPSGTAAPATLEVIKP---GGHQGHH 460
           GTVAR W G  P A RA       P TLEV+KP   GGHQGHH
Sbjct: 421 GTVARPWNGPAPSAARAPDRDDGKP-TLEVVKPGMQGGHQGHH 462


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,715,092
Number of extensions: 79503
Number of successful extensions: 243
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 238
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 372
Effective length of database: 1,203,190
Effective search space: 447586680
Effective search space used: 447586680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)