BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0084.p
         (214 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309620|ref|YP_003773712.1| major facilitator superfamily p...   225   2e-60
gi|300309773|ref|YP_003773865.1| major facilitator superfamily p...    95   4e-21

>gi|300309620|ref|YP_003773712.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 405

 Score =  225 bits (573), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 133/183 (72%), Positives = 149/183 (81%), Gaps = 3/183 (1%)

Query: 1   MNGKQADPPLSIPPATAAGTGTSVLQALSPLTLAVFIAFLTIGLQLPVLPLHLKEALGMN 60
           M+    D P  + P   A  G +V   L+P+TLAVFIAFLTIGLQLPVLPLHLK+ALGMN
Sbjct: 1   MSASSTDKPARVTPL--ASPGVAVFFKLAPITLAVFIAFLTIGLQLPVLPLHLKDALGMN 58

Query: 61  ATVVGVVVGAQFAAALLSRAWAGNVADLRGPKRAVVGGFVAAALSGLIYLASLLWLDQPA 120
           ATVVGVVVGAQFAAALLSRAWAGN ADLRG KRAV+ GF+ AALSGL+YLASL  L +P 
Sbjct: 59  ATVVGVVVGAQFAAALLSRAWAGNFADLRGAKRAVMAGFITAALSGLVYLASLALLGRPD 118

Query: 121 ISVAVLLAGRVLLALGESLVITGTMGWGIALVGPQHGGKVMAWLGIAIYAAM-AGLLLGL 179
            SVAVLL GRV+LALGESL++TG M WGI LVGPQHGGKVMAWLGIA+YAA  AG  LG+
Sbjct: 119 WSVAVLLLGRVVLALGESLMVTGAMSWGIGLVGPQHGGKVMAWLGIALYAAFGAGAPLGV 178

Query: 180 SIN 182
           +IN
Sbjct: 179 AIN 181


>gi|300309773|ref|YP_003773865.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 413

 Score = 95.1 bits (235), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 61/168 (36%), Positives = 94/168 (55%), Gaps = 7/168 (4%)

Query: 6   ADPPLSIPPATAAGTGTSVLQALSPLTLAVFIAFLTIGLQLPVLPLHLKEALGMNATVVG 65
           A PP  + PA        V + +       F+ +L IG+ + VLP ++   LG ++ + G
Sbjct: 17  AAPPRPLTPA-------KVTRQIIATAFFTFLVYLAIGIPMAVLPGYIHLDLGYSSVMAG 69

Query: 66  VVVGAQFAAALLSRAWAGNVADLRGPKRAVVGGFVAAALSGLIYLASLLWLDQPAISVAV 125
           + +  Q+ A  +SRA AG + D  G K+ V+ G +  + SG + L S L    P +S+ +
Sbjct: 70  LGISVQYFATFVSRANAGRMIDTVGAKQTVMRGMLLCSASGALLLCSALAQPLPFLSLVL 129

Query: 126 LLAGRVLLALGESLVITGTMGWGIALVGPQHGGKVMAWLGIAIYAAMA 173
           L A R LL LGESLV TG + WG+  VG ++  K+++W GIA YAA+A
Sbjct: 130 LFASRALLGLGESLVGTGAIMWGVGRVGSENTAKMISWNGIATYAALA 177


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.139    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 659,753
Number of extensions: 24458
Number of successful extensions: 149
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 2
Length of query: 214
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 133
Effective length of database: 1,236,335
Effective search space: 164432555
Effective search space used: 164432555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)