BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0077.p
         (140 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310936|ref|YP_003775028.1| transcription regulator protein...   243   4e-66
gi|300310934|ref|YP_003775026.1| Pb-specific transcription regul...    70   9e-14

>gi|300310936|ref|YP_003775028.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 141

 Score =  243 bits (620), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 117/134 (87%), Positives = 123/134 (91%)

Query: 1   MNIGEAATASGVSAKMIRHYEETGLIPKAGRTDAGYRVYAERDVHLLRFIRQARQLGFSM 60
           MNIGEAA+ASGVSAKMIRHYEETGLIP+A RTDAGYRVY +RDVHLLRFIRQARQLGFSM
Sbjct: 1   MNIGEAASASGVSAKMIRHYEETGLIPRASRTDAGYRVYGQRDVHLLRFIRQARQLGFSM 60

Query: 61  AQVSDLIGLWLDQSRSSRKVKQLAQTHIGELEQRIRELQTMKGTLERLVQDCHGDHRPDC 120
           AQVSDLIGLWLDQSR SRKVKQLAQTHI ELEQRI ELQ MK TLE+LVQ CHGD+RPDC
Sbjct: 61  AQVSDLIGLWLDQSRPSRKVKQLAQTHIAELEQRISELQGMKATLEQLVQGCHGDNRPDC 120

Query: 121 PILDALGAQPDCCA 134
           PIL+ALG   DCCA
Sbjct: 121 PILEALGGDADCCA 134


>gi|300310934|ref|YP_003775026.1| Pb-specific transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 150

 Score = 69.7 bits (169), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 1/132 (0%)

Query: 1   MNIGEAATASGVSAKMIRHYEETGLIPKAGRTDAGYRVYAERDVHLLRFIRQARQLGFSM 60
           + IGE A  +    + +R+YE+  L+P+  R+ A YR+Y ER V  L+FIR  R L  ++
Sbjct: 4   LKIGELAAKADCPVETVRYYEKEALLPEPTRSQANYRLYGERHVERLQFIRHCRSLDMTL 63

Query: 61  AQVSDLIGLWLDQSRSSRKVKQLAQTHIGELEQRIRELQTMKGTLERLVQDCH-GDHRPD 119
            +V +L+ L     +    V  L   HIG + +RI +LQ ++  L +L   C       D
Sbjct: 64  DEVRELLRLRDAPEQDCGGVNALLDKHIGHVAERIAQLQALQAQLRQLRAQCEVAQPARD 123

Query: 120 CPILDALGAQPD 131
           C IL  L + PD
Sbjct: 124 CGILQGLASLPD 135


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 422,068
Number of extensions: 15347
Number of successful extensions: 61
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 2
Length of query: 140
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 64
Effective length of database: 1,260,010
Effective search space: 80640640
Effective search space used: 80640640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)