BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0075.p (431 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310937|ref|YP_003775029.1| heavy metal translocating P-typ... 510 e-145 gi|300312503|ref|YP_003776595.1| cation transport P-type ATPase ... 107 3e-24 gi|300310933|ref|YP_003775025.1| metal-transporting P-type ATPas... 79 5e-16 gi|300311691|ref|YP_003775783.1| cation transport ATPase [Herbas... 59 6e-10 >gi|300310937|ref|YP_003775029.1| heavy metal translocating P-type ATPase [Herbaspirillum seropedicae SmR1] Length = 744 Score = 510 bits (1313), Expect = e-145, Method: Compositional matrix adjust. Identities = 256/298 (85%), Positives = 271/298 (90%), Gaps = 2/298 (0%) Query: 13 MPSSSPAAAEISLDIEGMSCASCVMRVEKALKKIPGVTEVSVNLATERASIATAAPVAPA 72 M S+ +ISLDIEGMSCASCVMRVEK LKKIPGVTEVSVNLATERASI TA VAP Sbjct: 1 MNDSTATRTDISLDIEGMSCASCVMRVEKVLKKIPGVTEVSVNLATERASIVTAGAVAPE 60 Query: 73 ALIAAIEKAGYQAHQHIPEETAAPASAKKQLPSWWPVAVSAALSLPLLLPMLLAPLGIGW 132 LIAAIEKAGY A H+PEE AAP +AK L SWWPVA+SAALSLPL+LPMLLAPLG+ W Sbjct: 61 QLIAAIEKAGYHARAHLPEE-AAP-TAKTALSSWWPVALSAALSLPLVLPMLLAPLGVHW 118 Query: 133 SLPPLWQWLLATPVQFWLGWRFYHAGWGALRARSGNMDLLVALGTSAAYGLSVWQWLSMP 192 SLPPLWQWLLATPVQFWLGWRFYHAGWGALRARSGNMDLLVALGTSAAYGLS+WQWL++P Sbjct: 119 SLPPLWQWLLATPVQFWLGWRFYHAGWGALRARSGNMDLLVALGTSAAYGLSLWQWLTLP 178 Query: 193 AMGEHAMAMPHLYFESSAVVITLVLLGKWLEGRAKRQTADAIAALNALRPDRARVRRDGQ 252 M HAMAMPHLYFESSAVVITLVLLGKWLEGRAKRQTADAIAALNALRP+ ARVRRDGQ Sbjct: 179 TMPGHAMAMPHLYFESSAVVITLVLLGKWLEGRAKRQTADAIAALNALRPENARVRRDGQ 238 Query: 253 DIDVPLAQVRVGDLVVLRPGERVPVDGIVKEGRSHLDEALLTGESRPQAKQAGDQLAA 310 DI+VPLAQVRVGDLVVLRPGERVPVDG+V+EGRSHLDEA+LTGESRPQAKQAGD L A Sbjct: 239 DIEVPLAQVRVGDLVVLRPGERVPVDGVVREGRSHLDEAMLTGESRPQAKQAGDPLTA 296 >gi|300312503|ref|YP_003776595.1| cation transport P-type ATPase [Herbaspirillum seropedicae SmR1] Length = 839 Score = 107 bits (266), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 89/305 (29%), Positives = 153/305 (50%), Gaps = 25/305 (8%) Query: 16 SSPAAAEISLDIEGMSCASCVMRVEKALKKIPGVTEVSVNLATERASIATA-APVAPAAL 74 ++ A+AE+ L I+G+ C++CV +EK L ++PG+ +N+AT R + A + A + Sbjct: 96 AADASAELVLSIDGLRCSACVWLIEKYLARLPGMQMAEMNVATSRLHLRRDPALCSTATI 155 Query: 75 IAAIEKAGYQAHQHIPEETAAPA--SAKKQLPSWWPVAVSAALSLPLLLPMLLAPLGIGW 132 + + GY A+ P A ++++ + +S + +P+ + GI Sbjct: 156 LRGLRGLGYTAYPFDPLRQGEQARRASRRLFRQLFIAGLSMMQVMMYAVPVYMTHEGIDP 215 Query: 133 SLPPLWQW---LLATPVQFWLGWRFYHAGWGALRARSGNMDLLVALGTSAAYGLS---VW 186 + L +W L P F+ F+ W LRAR+ MDL VA+G +AA+ S W Sbjct: 216 DMMSLMRWASLFLTIPAVFYSALPFFTGAWAGLRARAPGMDLPVAIGIAAAFLASAIATW 275 Query: 187 QWLSMPAMGEHAMAMPHLYFESSAVVITLVLLGKWLEGRAKRQTADAIAALNALRPDRAR 246 + GE ++F+S ++ I L+L ++LE A+R++A A+ + P A Sbjct: 276 R-------GEG-----EIWFDSVSMFIFLLLGSRYLEAAARRKSASALERMQQAFPASAL 323 Query: 247 VR----RDGQDIDVPLAQVRVGDLVVLRPGERVPVDGIVKEGRSHLDEALLTGESRPQAK 302 + + V AQ+R GD+++ RPG+ + D + EG D ALL+GESRPQ+ Sbjct: 324 LAPGYPEQRETTLVVAAQLREGDVILARPGDTIAADACLLEGAGEFDLALLSGESRPQSF 383 Query: 303 QAGDQ 307 Q G + Sbjct: 384 QIGQE 388 >gi|300310933|ref|YP_003775025.1| metal-transporting P-type ATPase transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 778 Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 57/150 (38%), Positives = 76/150 (50%), Gaps = 21/150 (14%) Query: 158 GWGALRARSGNMDLLVALGTSAAYGLSVWQWLSMPAMGEHAMAMPHLYFESSAVVITLVL 217 GW ALR S NM+ L++L A + W +AVVI L Sbjct: 202 GWIALRNFSLNMNFLMSLAVIGAAVIGQW--------------------PEAAVVIVLFT 241 Query: 218 LGKWLEGRAKRQTADAIAALNALRPDRARVR-RDGQDIDVPLAQVRVGDLVVLRPGERVP 276 L + +E + + +AIA L A+ PD A R DG VP V V D V + PGERVP Sbjct: 242 LAEMIEALSLDRARNAIAGLLAMTPDMATRRGEDGVWSTVPARTVTVDDTVRVAPGERVP 301 Query: 277 VDGIVKEGRSHLDEALLTGESRPQAKQAGD 306 +DG+V G + +++A +TGES P KQAGD Sbjct: 302 LDGLVLSGSTSINQAPITGESIPVQKQAGD 331 >gi|300311691|ref|YP_003775783.1| cation transport ATPase [Herbaspirillum seropedicae SmR1] Length = 853 Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 1/77 (1%) Query: 229 QTADAIAALNALRPDRARVRRDGQDIDVPLAQVRVGDLVVLRPGERVPVD-GIVKEGRSH 287 +T A+AAL L ARV RDG+ + + A++ GDL++L G RVP D G+++ Sbjct: 88 KTERALAALRVLNSPTARVIRDGRTMRIAAAELVRGDLILLEEGARVPADAGVLEASNLQ 147 Query: 288 LDEALLTGESRPQAKQA 304 LDE+LLTGE+ P K A Sbjct: 148 LDESLLTGEACPVEKFA 164 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.135 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 963,873 Number of extensions: 33424 Number of successful extensions: 197 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 189 Number of HSP's successfully gapped: 5 Length of query: 431 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 343 Effective length of database: 1,203,190 Effective search space: 412694170 Effective search space used: 412694170 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)