BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0070.p
         (420 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310943|ref|YP_003775035.1| site-specific recombinase trans...   575   e-165

>gi|300310943|ref|YP_003775035.1| site-specific recombinase
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 738

 Score =  575 bits (1483), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 287/324 (88%), Positives = 295/324 (91%), Gaps = 8/324 (2%)

Query: 8   MLVVWRRMRHGMQARYMDRHDVGRQLEVLMRRIDPAASWHERANWMIDVAEWLRHRPAVS 67
           MLVVWRRMRHGMQARYMDR DVGRQLEVLMRR DPA+SWHERANWMIDV EWLRHRPAVS
Sbjct: 1   MLVVWRRMRHGMQARYMDRQDVGRQLEVLMRRADPASSWHERANWMIDVVEWLRHRPAVS 60

Query: 68  LLDRQAWHQVRRQRLAIMLDWLDQHRDVRRAVQNALQKTLREANGPELFSTTGLPHEPGF 127
            LDR+AWHQVRR+RLAI+LDWLDQHR+VRRAVQNALQKTLREA GPELFSTTGLPHEPGF
Sbjct: 61  FLDRRAWHQVRRERLAILLDWLDQHREVRRAVQNALQKTLREATGPELFSTTGLPHEPGF 120

Query: 128 FGELSERLARLILPRHLSPTDLSSLFTAMFPDPDDAAWLLELDNELLQRLWKLMADDGIS 187
           FGELSERLARLILPRHLSPTDLSSLFTAMFPDPDDA WLLELDN+LLQRLWKLMADDGIS
Sbjct: 121 FGELSERLARLILPRHLSPTDLSSLFTAMFPDPDDAVWLLELDNDLLQRLWKLMADDGIS 180

Query: 188 HMYWQQIEEAITYLTTTVVADGISPAFRQRLEPKMPMRATPFLALRREMEAWLRAQPGDL 247
           HMYWQQIEEAITYLTTTVVADGISPAFRQRLEPKMPMRATPFLALRREMEAWLRAQPGD+
Sbjct: 181 HMYWQQIEEAITYLTTTVVADGISPAFRQRLEPKMPMRATPFLALRREMEAWLRAQPGDM 240

Query: 248 GALRSVRMLVAVCHAQTDRIYAHLDEYGVSVSLVYRVERMRAHLQRIGRLIDVFCFHPKR 307
           GALRSVRMLVAVCHAQTDRIYAHLDEYGVSVSLVYRVERMRAHLQRIGRLIDV    P  
Sbjct: 241 GALRSVRMLVAVCHAQTDRIYAHLDEYGVSVSLVYRVERMRAHLQRIGRLIDVRSGMPG- 299

Query: 308 PDAAQFCPAGAQDGRAQCRSPGAG 331
                  PA +         PGAG
Sbjct: 300 -------PAISPAVPGMAVKPGAG 316


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.139    0.456 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,271,346
Number of extensions: 49646
Number of successful extensions: 186
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 332
Effective length of database: 1,203,190
Effective search space: 399459080
Effective search space used: 399459080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 132 (55.5 bits)