BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0069.p
         (290 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310943|ref|YP_003775035.1| site-specific recombinase trans...   387   e-109

>gi|300310943|ref|YP_003775035.1| site-specific recombinase
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 738

 Score =  387 bits (995), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 237/290 (81%), Positives = 259/290 (89%)

Query: 1   MRDLIAESGQLLRSQSAGIFGNLLAVIPVTAALCALGWFALGSQPMPANEARQAIAALSL 60
           MRDLIAESG+LLRSQSAGIFGNLLAV+PVTAALCALGWFAL  +PM    ARQ++A+LSL
Sbjct: 449 MRDLIAESGRLLRSQSAGIFGNLLAVVPVTAALCALGWFALDRRPMSLEAARQSVASLSL 508

Query: 61  VGPTPLYAALTGVLLWLASLAAGFADNWFALRRVREVVSNHRRLVHGLGAMRAQRCAAWL 120
           VGPTPLYAALTGVLLWLASL AGFADNWFALRRVREVVSNHRRLVHGLGA+RAQRCAAWL
Sbjct: 509 VGPTPLYAALTGVLLWLASLVAGFADNWFALRRVREVVSNHRRLVHGLGALRAQRCAAWL 568

Query: 121 ERNVATIAGSLSLAVLLGLAPVVAAFFSLPLDIRHVTLAAGTLTAAVFSLGWEILMTPAF 180
           ERNVATIAGS +LA+LLG+APVVAAFFSLPLDIRHVTLAAGTLTAA FSLGW+ L TPAF
Sbjct: 569 ERNVATIAGSFALALLLGMAPVVAAFFSLPLDIRHVTLAAGTLTAAAFSLGWQALTTPAF 628

Query: 181 WLAAGGVAATALLSVAVAFACALALALRSRDLPRRARNIAMRAVLRRFVVRPLFFILPQK 240
           WLAAGGVA T LLSVAVAFACALALALRSRDLPRRARN+AMRAVLRRFVVRPLFFILP++
Sbjct: 629 WLAAGGVAITGLLSVAVAFACALALALRSRDLPRRARNVAMRAVLRRFVVRPLFFILPER 688

Query: 241 TDAAVQDDAGEDEDDDDDGQGGARQDNRQPRLASLERGQDMHVQATRHVA 290
             AAV+D++ EDE DDDDG  G   D++  RLAS+ER  ++     RHVA
Sbjct: 689 AHAAVRDESDEDEQDDDDGGDGPGPDHQMSRLASVERDDEVQSSVRRHVA 738


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.136    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 609,517
Number of extensions: 19663
Number of successful extensions: 125
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 206
Effective length of database: 1,222,130
Effective search space: 251758780
Effective search space used: 251758780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 130 (54.7 bits)