BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0068.p
         (101 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310945|ref|YP_003775037.1| periplasmic cytochrome c553 pro...   197   1e-52
gi|300309495|ref|YP_003773587.1| cytochrome c553 protein [Herbas...    55   1e-09
gi|300310946|ref|YP_003775038.1| periplasmic cytochrome c553 pro...    52   7e-09

>gi|300310945|ref|YP_003775037.1| periplasmic cytochrome c553
           protein [Herbaspirillum seropedicae SmR1]
          Length = 106

 Score =  197 bits (501), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 97/101 (96%), Positives = 99/101 (98%)

Query: 1   VFLALAGVLGSASAADIVGNAKAAENKVSMCIGCHGIPGYKASYPEVYQVPMLGGQSAKY 60
           VFLAL GV+GSASAADIVGNAKAAENKVSMCIGCHGIPGYKASYPEVYQVPMLGGQSA Y
Sbjct: 6   VFLALVGVVGSASAADIVGNAKAAENKVSMCIGCHGIPGYKASYPEVYQVPMLGGQSAAY 65

Query: 61  IENALRAYQKGERKHPSMMGVAASLSDQDIADLAAYYSQQK 101
           IE+ALRAYQKGERKHPSMMGVAASLSDQDIADLAAYYSQQK
Sbjct: 66  IESALRAYQKGERKHPSMMGVAASLSDQDIADLAAYYSQQK 106


>gi|300309495|ref|YP_003773587.1| cytochrome c553 protein
           [Herbaspirillum seropedicae SmR1]
          Length = 220

 Score = 54.7 bits (130), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 54/115 (46%), Gaps = 20/115 (17%)

Query: 1   VFLALAGVLGSASAAD---------------IVGNAKAAENKVSMCIGCHGIPGYKASYP 45
           VF A   V  +A AAD               +  N  +A N V+ C+ CHG  G      
Sbjct: 12  VFAAFLAVASTAHAADDKKAPVKADPAKGEALYTNGDSARNIVA-CVSCHGAAGNST--- 67

Query: 46  EVYQVPMLGGQSAKYIENALRAYQKGERKHPSMMGVAASLSDQDIADLAAYYSQQ 100
            + Q P L GQ   YI   L  ++  +R +P M  +A +LSD+DI ++AA+ + Q
Sbjct: 68  -ITQNPKLAGQHEAYIAKQLLNFRTPDRNNPVMSPMAKALSDEDIHNVAAFLAAQ 121


>gi|300310946|ref|YP_003775038.1| periplasmic cytochrome c553
           protein [Herbaspirillum seropedicae SmR1]
          Length = 117

 Score = 52.4 bits (124), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 51/101 (50%), Gaps = 9/101 (8%)

Query: 1   VFLALAGVLGSASAADIVGNAKAAENKVSMCIGCHGIPGYKASYPEVYQVPMLGGQSAKY 60
             LA A +   A+ A  V N +A   K + C  CHG   Y +     Y  P L GQ A Y
Sbjct: 9   CLLAAATLCTQAANAADVANGRALTEKYN-CASCHG-KDYNSPTEPAY--PKLAGQHADY 64

Query: 61  IENALRAYQKGE-----RKHPSMMGVAASLSDQDIADLAAY 96
           +++AL AY++G      R +  M   A  LSD+DI D+AAY
Sbjct: 65  LKHALTAYRRGNTAMNGRNNAIMSAQAKPLSDRDINDIAAY 105


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.129    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 246,494
Number of extensions: 7859
Number of successful extensions: 31
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 3
Length of query: 101
Length of database: 1,619,870
Length adjustment: 70
Effective length of query: 31
Effective length of database: 1,288,420
Effective search space: 39941020
Effective search space used: 39941020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 123 (52.0 bits)