BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0057.p
         (391 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310958|ref|YP_003775050.1| nicotinate phosphoribosyltransf...   805   0.0  
gi|300313859|ref|YP_003777951.1| nicotinic acid phosphoribosyltr...   412   e-116

>gi|300310958|ref|YP_003775050.1| nicotinate
           phosphoribosyltransferase [Herbaspirillum seropedicae
           SmR1]
          Length = 402

 Score =  805 bits (2079), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/391 (98%), Positives = 387/391 (98%)

Query: 1   MIITSLLDTDLYKFTMMQVVLHHFPGAQVEYKFKCRNEHIDLTPYVDEIRAEIAALCRLR 60
           MIITSLLDTDLYKFTMMQVVLHHFPGAQVEY+FKCRNE++DL PYVDEIRAEIAALCRLR
Sbjct: 12  MIITSLLDTDLYKFTMMQVVLHHFPGAQVEYRFKCRNENVDLRPYVDEIRAEIAALCRLR 71

Query: 61  FKEDELNYLRGLRFIKSDFVDFLDLFHLNEKYITVQPDPAGNGEIEIQVKGPWLHTIMFE 120
           FKEDELNYLR LRFIKSDFVDFLDLFHLNEKYITVQPDPAGNGEIEI VKGPWLHTIMFE
Sbjct: 72  FKEDELNYLRSLRFIKSDFVDFLDLFHLNEKYITVQPDPAGNGEIEISVKGPWLHTIMFE 131

Query: 121 VPVLAIVNEVYFRATQRSPDLEEGRARLRKKMSVITDDAELAGCKIADYGTRRRFSRSWH 180
           VPVLAIVNEVYFRATQRSPDLEEGRARLRKKMSVITDD ELAGCKIADYGTRRRFSRSWH
Sbjct: 132 VPVLAIVNEVYFRATQRSPDLEEGRARLRKKMSVITDDPELAGCKIADYGTRRRFSRSWH 191

Query: 181 AEVIDEMKQHMGDHFAGTSNVMYAMQHDLTPLGTMAHEYLQACQALGPRLRDSQTFAFEM 240
           AEVIDEMKQHMGDHFAGTSNVMYAMQHDLTPLGTMAHEYLQACQALGPRLRDSQTFAFEM
Sbjct: 192 AEVIDEMKQHMGDHFAGTSNVMYAMQHDLTPLGTMAHEYLQACQALGPRLRDSQTFAFEM 251

Query: 241 WAREYRGDLGITLSDVYGMDAFLRDYDMYFCKLFDGARHDSGDPFEWGERLIQHYRDNRV 300
           WAREYRGDLGITLSDVYGMDAFLRDYDMYFCKLFDGARHDSGDPFEWGERLIQHYRDNRV
Sbjct: 252 WAREYRGDLGITLSDVYGMDAFLRDYDMYFCKLFDGARHDSGDPFEWGERLIQHYRDNRV 311

Query: 301 DPSSKVLVFSDSLDFDKVRALYLRFKDRAKVAFGVGTNLTNDLGYTPLQVVMKMVRCNGQ 360
           DPSSKVLVFSDSLDFDKVRALYLRFKDRAKVAFGVGTNLTNDLGYTPLQVVMKMVRCNGQ
Sbjct: 312 DPSSKVLVFSDSLDFDKVRALYLRFKDRAKVAFGVGTNLTNDLGYTPLQVVMKMVRCNGQ 371

Query: 361 PVAKLSDTPSKNMCDDPAYVNYLRQVFQIKA 391
           PVAKLSDTPSKNMCDDPAYVNYLRQVFQIKA
Sbjct: 372 PVAKLSDTPSKNMCDDPAYVNYLRQVFQIKA 402


>gi|300313859|ref|YP_003777951.1| nicotinic acid
           phosphoribosyltransferase [Herbaspirillum seropedicae
           SmR1]
          Length = 400

 Score =  412 bits (1059), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 204/395 (51%), Positives = 267/395 (67%), Gaps = 8/395 (2%)

Query: 2   IITSLLDTDLYKFTMMQVVLHHFPGAQVEYKFKCRNE-HIDLTPYVDEIRAEIAALCRLR 60
           ++ SLL+TDLYKFTM Q +LH  PGAQ EY F CRN+    L    +++  E+  LC LR
Sbjct: 4   VVRSLLETDLYKFTMWQALLHSHPGAQAEYTFVCRNQPAFPLAELKEDVERELDHLCCLR 63

Query: 61  FKEDELNYLRGLRFIKSDFVDFLDLFHLNEKYITVQPDPAGNGEIEIQVKGPWLHTIMFE 120
            + +EL+YL  LR++KSDF+DFL LF    K+I V  D      + I  +GP +H + FE
Sbjct: 64  LRPEELDYLAQLRYMKSDFIDFLALFRFQRKFIEVSTD---GDRLCIVARGPQVHVMGFE 120

Query: 121 VPVLAIVNEVYFRATQRSPDLEEGRARLRKKMSVITDDA-ELAG---CKIADYGTRRRFS 176
           + VL IVNE+YFR    +  L+E R RL+ K++++   A E AG    +  D+G RRR+S
Sbjct: 121 IFVLYIVNELYFRRVGHAGALDEARRRLQDKIALLKSFASEPAGRHPFEFFDFGVRRRYS 180

Query: 177 RSWHAEVIDEMKQHMGDHFAGTSNVMYAMQHDLTPLGTMAHEYLQACQALGPRLRDSQTF 236
            +W  EV+  + + +  +F G+SNV  AMQ+ L P+GTMAHEYLQ+ Q+ G RLRD Q  
Sbjct: 181 GAWQEEVVATLAREVPQYFKGSSNVWLAMQYQLVPIGTMAHEYLQSYQSFGVRLRDFQKA 240

Query: 237 AFEMWAREYRGDLGITLSDVYGMDAFLRDYDMYFCKLFDGARHDSGDPFEWGERLIQHYR 296
           A E W +EYRGDLG+ L+DV GMDAFL D+D+YF KLFDG RHDSGDPFEWGE+ + HYR
Sbjct: 241 ALEAWVQEYRGDLGVALTDVVGMDAFLADFDLYFAKLFDGLRHDSGDPFEWGEKALAHYR 300

Query: 297 DNRVDPSSKVLVFSDSLDFDKVRALYLRFKDRAKVAFGVGTNLTNDLGYTPLQVVMKMVR 356
             R+D ++K LVFSD LD  +   LY  F DRA   FG+GTNL+ND G TPL +VMK+  
Sbjct: 301 KLRLDANTKRLVFSDGLDLPQALRLYRHFSDRAMTGFGIGTNLSNDTGITPLNIVMKLSS 360

Query: 357 CNGQPVAKLSDTPSKNMCDDPAYVNYLRQVFQIKA 391
           CNGQ VAKLSD+P K +C D  ++ YLRQ+F I A
Sbjct: 361 CNGQAVAKLSDSPGKTLCKDETFLAYLRQLFGIAA 395


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.140    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,203,398
Number of extensions: 50295
Number of successful extensions: 141
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 2
Length of query: 391
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 304
Effective length of database: 1,207,925
Effective search space: 367209200
Effective search space used: 367209200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)