BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0055.p
         (454 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310959|ref|YP_003775051.1| NA+/H+ antiporter permease [Her...   768   0.0  

>gi|300310959|ref|YP_003775051.1| NA+/H+ antiporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 476

 Score =  768 bits (1983), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/447 (94%), Positives = 436/447 (97%)

Query: 8   AADLDGAGLSLAWALPFAGVLLSIAVLPLLAPAMWHHHFGKIAGAWALAFLLPFAALHGA 67
           +A+LDGAGLSLAWA+PFAGVLLSIAVLPLL PA+WHHHFGKIA AWALAFLLPFAALHGA
Sbjct: 30  SAELDGAGLSLAWAIPFAGVLLSIAVLPLLMPALWHHHFGKIAAAWALAFLLPFAALHGA 89

Query: 68  HAALAISVHALVAEYLPFIILLTALFTVAGGICVRGNLHGTPALNTGLLALGTLLASVMG 127
           HAALAISVHALVAEYLPFIILLTALFTVAGGICVRGNLHGTP LNTGLLALGTLLAS+MG
Sbjct: 90  HAALAISVHALVAEYLPFIILLTALFTVAGGICVRGNLHGTPGLNTGLLALGTLLASIMG 149

Query: 128 TTGAAMLLIRPLIRANDDRKHTVHVVVFFIFLVANAGGSLTPLGDPPLFLGFLKGVDFFW 187
           TTGAAMLLIRPLIRANDDRKHTVHVVVFFIFLVANAGGSLTPLGDPPLFLGFLKGVDFFW
Sbjct: 150 TTGAAMLLIRPLIRANDDRKHTVHVVVFFIFLVANAGGSLTPLGDPPLFLGFLKGVDFFW 209

Query: 188 TARHLLGPMAFLCGALLLIFYLLDRHFYLNREERRPLDPTPDSALRLEGKFNFLLLGAVV 247
           TARHLLGPMAFLCGALLLIFY LDRHFYLNREERRPLDPTPDSA +LEG+ NFLLLGAVV
Sbjct: 210 TARHLLGPMAFLCGALLLIFYGLDRHFYLNREERRPLDPTPDSAWQLEGRVNFLLLGAVV 269

Query: 248 GLVLMSGLWKPGVAAEVLGTPLEWQNLLRDGALLGVILLSLWLTPRAARAGNDFGWGPML 307
           GLVLMSGLWKPGVA E++G PLEWQNLLRDGALLGVIL+SLWLTP++AR+GN+FGWGPML
Sbjct: 270 GLVLMSGLWKPGVATELMGAPLEWQNLLRDGALLGVILVSLWLTPKSARSGNEFGWGPML 329

Query: 308 EVGKLFAAIFLTIAPVIAMLRAGEQGAFAAVVHAVTGPDGKPDDVMYFWMTGVLSSFLDN 367
           EVGKLFAAIFLTIAPVIAMLRAGEQGAFAAVV AVTGPDGKPDDVMYFWMTG+LSSFLDN
Sbjct: 330 EVGKLFAAIFLTIAPVIAMLRAGEQGAFAAVVRAVTGPDGKPDDVMYFWMTGLLSSFLDN 389

Query: 368 APTYLVFFNTASGDARELMGPLASTLAAISAGAVFMGANSYIGNAPNMMVKAIAEERGIR 427
           APTYLVFFNTASGDARELMGPLASTLAAISAGAVFMGANSYIGNAPNMMVKAIAEERGIR
Sbjct: 390 APTYLVFFNTASGDARELMGPLASTLAAISAGAVFMGANSYIGNAPNMMVKAIAEERGIR 449

Query: 428 MPSFFGYMAWSVGILVPLFIVMSFLFF 454
           MPSFFGYMAWS GIL PLFIVMSFLFF
Sbjct: 450 MPSFFGYMAWSAGILAPLFIVMSFLFF 476


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.143    0.450 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,248,137
Number of extensions: 47395
Number of successful extensions: 314
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 314
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 366
Effective length of database: 1,203,190
Effective search space: 440367540
Effective search space used: 440367540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 132 (55.5 bits)