BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0051.p
         (330 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310963|ref|YP_003775055.1| signal peptide protein [Herbasp...   634   0.0  

>gi|300310963|ref|YP_003775055.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 327

 Score =  634 bits (1635), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/330 (93%), Positives = 317/330 (96%), Gaps = 3/330 (0%)

Query: 1   MLRRFSQLLSLSLRAACVSAVLACMAAPVHANVVVVLNSGDASVSLLDETGEKELSTFSV 60
           MLRR  Q  SL+LRAACVSAVLA  A   HANVVVVLNSGDASVSLLDETGEKELSTFSV
Sbjct: 1   MLRRIRQYFSLTLRAACVSAVLAVSA---HANVVVVLNSGDASVSLLDETGEKELSTFSV 57

Query: 61  GKEPHHLMATPDNKSLIVASATGNQLLFLDPKTGVVQRKLRDIIDPYQIGFTPDQKWFVA 120
           GKEPHHLMATPDNKSLIVASATGNQLLFLDPKTG VQRK+RDIIDPYQIGFTPDQKWFVA
Sbjct: 58  GKEPHHLMATPDNKSLIVASATGNQLLFLDPKTGAVQRKIRDIIDPYQIGFTPDQKWFVA 117

Query: 121 TGLRLDRVDVYSYDGQDLKLSKRIPLAKTPSHIAFDNASTTAFITQQGSDQISAIDLATQ 180
           TGLRLDRVDVYSYDGQDLKLSKRIPL KTPSHIAFDNASTTAFITQQGSDQISAIDLATQ
Sbjct: 118 TGLRLDRVDVYSYDGQDLKLSKRIPLPKTPSHIAFDNASTTAFITQQGSDQISAIDLATQ 177

Query: 181 QVKWTMPVGKLPAGIIMTPDNKYLMVGIMGSDYVEVIDWRTQKMVKKIKTGIGAHNFRGQ 240
           QVKWTMPVGKLPAGIIMTPDNKYLMVGIMG+DYVEVIDWRTQK+VKKIKTG+GAHNFRGQ
Sbjct: 178 QVKWTMPVGKLPAGIIMTPDNKYLMVGIMGADYVEVIDWRTQKIVKKIKTGVGAHNFRGQ 237

Query: 241 GDKRYVYVSNRVANTISVVDMTTLENVGTIKVPGGPDCMEVTADGKTMWATLRWSKKVAV 300
           GDKR+VYVSNRVANTISVVDMTTLENVGTIKVPGGPDCMEVT+DGKTMWATLRW KKVAV
Sbjct: 238 GDKRFVYVSNRVANTISVVDMTTLENVGTIKVPGGPDCMEVTSDGKTMWATLRWVKKVAV 297

Query: 301 IDLETRSVTKVIPVGRSPHGIYLYNRAPDL 330
           IDL +RSVTKVIPVGRSPHGIYL+NRAPDL
Sbjct: 298 IDLASRSVTKVIPVGRSPHGIYLHNRAPDL 327


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,001,517
Number of extensions: 40247
Number of successful extensions: 128
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 244
Effective length of database: 1,212,660
Effective search space: 295889040
Effective search space used: 295889040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)