BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0050.p
         (246 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310964|ref|YP_003775056.1| xylanase/chitin deacetylase [He...   476   e-136

>gi|300310964|ref|YP_003775056.1| xylanase/chitin deacetylase
           [Herbaspirillum seropedicae SmR1]
          Length = 273

 Score =  476 bits (1225), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 225/243 (92%), Positives = 233/243 (95%)

Query: 3   APEASACKGKIYLTFDTGSQSQAELIEQTLQRHHIKATFFLANEKTIHGDYSLDPAWAPL 62
            P+ SACKG+IYLTFDTGSQSQAELIEQTLQRHHIKATFFLANEKTIHGDYSLDP WAPL
Sbjct: 30  TPQESACKGRIYLTFDTGSQSQAELIEQTLQRHHIKATFFLANEKTIHGDYSLDPGWAPL 89

Query: 63  WKRLVAEGHAFGTHTFDHVYVVRDLPEGKIEVRPQFGAQAGKKLQWTPAQYCEEMKRVDQ 122
           WKRL  EGHAFGTHTFDHVYV+RDLPEGKIEVRPQFGAQAGKKLQWTPAQYCEEMKRVDQ
Sbjct: 90  WKRLAGEGHAFGTHTFDHVYVIRDLPEGKIEVRPQFGAQAGKKLQWTPAQYCEEMKRVDQ 149

Query: 123 RFQQLTGHKLDPLWRAPGGRLTHNLLKAGEACGYAHVAWAPAGFSGDELPSDKFPNEMLL 182
           RFQ+LTG KLDPLWRAPGGRLT NLLKAG+ACGYAHVAWAPAGFSGDELPSDKFPNEMLL
Sbjct: 150 RFQELTGRKLDPLWRAPGGRLTPNLLKAGQACGYAHVAWAPAGFSGDELPSDKFPNEMLL 209

Query: 183 KKALDGLKDGDIFLAHMGIWSRQDPWAPAVLEPLISGLEQKGFCFATLREHPSYRHLFAA 242
           KKALDGLKDGDIFLAHMGIWSRQDPWAPAVLEPLI+GLE KGFCFATLR+HP+YRHLF  
Sbjct: 210 KKALDGLKDGDIFLAHMGIWSRQDPWAPAVLEPLITGLEHKGFCFATLRDHPAYRHLFTV 269

Query: 243 GKE 245
           GKE
Sbjct: 270 GKE 272


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 849,053
Number of extensions: 35019
Number of successful extensions: 83
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 163
Effective length of database: 1,226,865
Effective search space: 199978995
Effective search space used: 199978995
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)