BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0036.p (261 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310974|ref|YP_003775066.1| transcription regulator protein... 510 e-146 gi|300309916|ref|YP_003774008.1| transcription regulator protein... 82 4e-17 gi|300310493|ref|YP_003774585.1| transcription regulator protein... 80 1e-16 gi|300313062|ref|YP_003777154.1| IclR family transcription regul... 77 1e-15 gi|300313290|ref|YP_003777382.1| IclR family transcription regul... 72 6e-14 >gi|300310974|ref|YP_003775066.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 261 Score = 510 bits (1313), Expect = e-146, Method: Compositional matrix adjust. Identities = 255/261 (97%), Positives = 257/261 (98%), Gaps = 2/261 (0%) Query: 1 MKKEAAGETEQ-ISIQVIERMVSLLDALAEYPDPVSLKELSAATDLHPSTAHRILNDLVV 59 MKKEA GETEQ ISIQVIERMVSLLDALA YPDPVSLKELSAATDLHPSTAHRILNDLVV Sbjct: 1 MKKEA-GETEQHISIQVIERMVSLLDALAAYPDPVSLKELSAATDLHPSTAHRILNDLVV 59 Query: 60 KRFVDRVEPGTYRLGMRLLELGNIVKSRLSVREAALDFMRALHRKTHQTINLSVRQADEI 119 KRFVDRVEPGTYRLGMRLLELGNIVKSRLSVREAALDFMRALHRKTHQTINLSVRQADEI Sbjct: 60 KRFVDRVEPGTYRLGMRLLELGNIVKSRLSVREAALDFMRALHRKTHQTINLSVRQADEI 119 Query: 120 VYIDRSFSERSGMQVVRAIGGRAPLHLTSTGKLFLSVDDPKNVRAYATRTGLAGHNKNSI 179 VYIDRSFSERSGMQVVRAIGGRAPLHLTSTGKLFLSVDDPKNVRAYATRTGLAGHNKNSI Sbjct: 120 VYIDRSFSERSGMQVVRAIGGRAPLHLTSTGKLFLSVDDPKNVRAYATRTGLAGHNKNSI 179 Query: 180 TDLTKLERELSMVRALGYARDNEELELGVRCMAAGICDDSGKLVAGLSISAPADRLQDEW 239 TDL KLERELSMVRALGYARDNEELELGVRCMAAGICDDSGKLVAGLSISAPADRLQDEW Sbjct: 180 TDLAKLERELSMVRALGYARDNEELELGVRCMAAGICDDSGKLVAGLSISAPADRLQDEW 239 Query: 240 VDDLVSTASQISSALGYRKDR 260 V+DLVSTASQISSALGYR+DR Sbjct: 240 VEDLVSTASQISSALGYRQDR 260 >gi|300309916|ref|YP_003774008.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 265 Score = 82.0 bits (201), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 70/247 (28%), Positives = 115/247 (46%), Gaps = 12/247 (4%) Query: 17 IERMVSLLDALAEYPDPVSLKELSAATDLHPSTAHRILNDLVVK-RFVDRVEPGTYRLGM 75 + + +L +A+ P+++ +L+A + T +RIL L+ + V+ Y +G Sbjct: 20 FSKFMVVLQLIADQDAPLNIAQLAALSGYPRPTVYRILAALMAEGMVVENPRNKQYEVGP 79 Query: 76 RLLELGNIVKSRLSVREAALDFMRALHRKTHQTINLSVRQADEIVYIDRSFSERSGMQVV 135 RL+ L + R +R A++ +R L T +T++L+V +VYI++ S Q V Sbjct: 80 RLINLASRAWDRSDIRTTAIESLRQLRDLTRETVHLAVPSDHSMVYIEKLESP----QAV 135 Query: 136 RA---IGGRAPLHLTSTGKLFLSVDDPKNVRAYATRTGLAGHNKNSITDLTKLERELSMV 192 R IG R L+ +S GK +L+ + + L N+ T+L L ++ Sbjct: 136 RMDSRIGTRVTLYSSSVGKAYLAGLEEAHRERLMRTLHLQAFTANTHTELAALRADVEDT 195 Query: 193 RALGYARDNEELELGVRCMAAGICDDSGKLVAGLSISAPADR----LQDEWVDDLVSTAS 248 RA GYA D EE E + C A I G VA +S+S P R Q +V L+ + Sbjct: 196 RARGYAEDREENEAQIFCYGAAIVGADGVPVACVSVSIPLYRRLPDAQQAYVQPLLQACA 255 Query: 249 QISSALG 255 IS L Sbjct: 256 TISRKLA 262 >gi|300310493|ref|YP_003774585.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 263 Score = 80.5 bits (197), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 61/227 (26%), Positives = 121/227 (53%), Gaps = 6/227 (2%) Query: 15 QVIERMVSLLDALAEYPDPVSLKELSAATDLHPSTAHRILNDLVVKRFVDRVEPGT--YR 72 Q +E+ +++L A ++L ++++AT + S+A R+++ L ++ + P T Y+ Sbjct: 15 QSLEKGLAVLRAFNAQHRTMTLGDVASATGISKSSAQRMVHTLETLGYICK-HPKTRRYQ 73 Query: 73 LGMRLLELG-NIVKSRLSVREAALDFMRALHRKTHQTINLSVRQADEIVYIDRSFSERSG 131 L +++E+G N + + + V + A F+ L T +T+NL+ E+VY+ R F Sbjct: 74 LTPKVMEVGYNYLAADILV-DVANPFLSELANITGETVNLTEPYDGEMVYVAR-FVASKF 131 Query: 132 MQVVRAIGGRAPLHLTSTGKLFLSVDDPKNVRAYATRTGLAGHNKNSITDLTKLERELSM 191 + + IG R P++ T++G+ +LS +P+ +A + H ++ TD+ + + L+ Sbjct: 132 IPIHMPIGSRIPMYCTASGRAYLSALEPEEAQAILESSERTVHTPHTRTDVEDIMQLLAA 191 Query: 192 VRALGYARDNEELELGVRCMAAGICDDSGKLVAGLSISAPADRLQDE 238 R G+A + EEL LG +A+ + + K VA + + AP R E Sbjct: 192 SRERGFASNREELFLGDMSIASPVFNSERKPVASVHVVAPTSRWSVE 238 >gi|300313062|ref|YP_003777154.1| IclR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 260 Score = 77.0 bits (188), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 84/163 (51%), Gaps = 7/163 (4%) Query: 71 YRLGMRLLELGNIVKSRLSVREAALDFMRALHRKTHQTINLSVRQADEIVYIDRSFSERS 130 + L RLL LG V A + F++ L ++ ++ N S+ DEIVY+ R + Sbjct: 73 FWLMPRLLNLGQSYLESARVPRAVVPFLQRLTQQLQESTNFSLLDGDEIVYVTRV----T 128 Query: 131 GMQVVRA---IGGRAPLHLTSTGKLFLSVDDPKNVRAYATRTGLAGHNKNSITDLTKLER 187 Q+V A G R P + T+ G++ L + + ++AY R L H ++TD L + Sbjct: 129 AAQLVNAGFEPGTRLPAYTTTAGRVLLGMREDAEIQAYLERVNLIPHTHMAMTDKAALFQ 188 Query: 188 ELSMVRALGYARDNEELELGVRCMAAGICDDSGKLVAGLSISA 230 E+ +R GY + E+G+R +A + + +G+++ LS+++ Sbjct: 189 EILTMRRQGYGITENQFEMGMRGIAIAVKNRNGRVIGALSVTS 231 >gi|300313290|ref|YP_003777382.1| IclR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 260 Score = 71.6 bits (174), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 60/240 (25%), Positives = 120/240 (50%), Gaps = 7/240 (2%) Query: 17 IERMVSLLDALAEYPDPVSLKELSAATDLHPSTAHRILNDLVVKRFVDRVEPGTYRLGMR 76 + R ++++ A ++ +++ ++S T + + R L+ L + D + + L + Sbjct: 19 LARGLAVIRAFSDSRRSLTIAQISQKTGIPRAAVRRCLHTLKQLGYADS-DVNNFSLRPK 77 Query: 77 LLELGNIVKSRLSVREAALDFMRALHRKTHQTINLSVRQADEIVYIDRSFSERSGMQVVR 136 +L LG S + +A ++ + R ++ +L+V E++Y+ RS + R M V Sbjct: 78 ILTLGYSYLSSTPLTVSAQPYLNNISRTLGESCSLAVLDDHEVLYVARSAASRV-MSVAL 136 Query: 137 AIGGRAPLHLTSTGKLFLSVDDPKNVRAYATRTGLAGHNKNSITDLTKLERELSMVRALG 196 G R P + TS G+ L+ ++AY + L + ++ +L L+ VRA G Sbjct: 137 NTGSRLPAYCTSLGRAMLAHLPEDQLKAYFDKVKLRALTEKTVVSQKRLRDILAGVRANG 196 Query: 197 YARDNEELELGVRCMAAGICDDSGKLVAGLSISAPADR-----LQDEWVDDLVSTASQIS 251 YA +EELE+G+R +A + SG ++A L++ A A R +++E + L+ A ++S Sbjct: 197 YAVIDEELEVGLRSIAVPVRGASGNVLAALNVGAQAARVSVAQMEEEILPVLLRGAQELS 256 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.133 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 746,574 Number of extensions: 28590 Number of successful extensions: 114 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 113 Number of HSP's successfully gapped: 7 Length of query: 261 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 178 Effective length of database: 1,226,865 Effective search space: 218381970 Effective search space used: 218381970 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)