BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0031.p
         (122 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310979|ref|YP_003775071.1| alkanesulfonates ABC transporte...   134   3e-33
gi|300309985|ref|YP_003774077.1| nitrate/sulfonate/bicarbonate A...    61   2e-11

>gi|300310979|ref|YP_003775071.1| alkanesulfonates ABC transporter
          permease [Herbaspirillum seropedicae SmR1]
          Length = 279

 Score =  134 bits (336), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 79/98 (80%), Positives = 86/98 (87%), Gaps = 2/98 (2%)

Query: 1  MTSATNPVLASTA-PQEQARPKAAAKAARKPRGAWVGWLLPVLLLVWWEIAAQAGWLSSR 59
          MTSA+NPV    A PQEQA+PKAA K+  +P  AW+GWLLP+LLLVWWE+AAQAGWLSSR
Sbjct: 1  MTSASNPVAGRVAGPQEQAKPKAARKSF-QPSHAWIGWLLPLLLLVWWEVAAQAGWLSSR 59

Query: 60 ILPEPFAVLKAAWNLSASGELWRHLAVSSGRAASGFAV 97
          ILPEP AVLKAAW LSASGELWRHLAVSSGRAASGFAV
Sbjct: 60 ILPEPLAVLKAAWELSASGELWRHLAVSSGRAASGFAV 97


>gi|300309985|ref|YP_003774077.1| nitrate/sulfonate/bicarbonate ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 278

 Score = 61.2 bits (147), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 51/90 (56%)

Query: 32  GAWVGWLLPVLLLVWWEIAAQAGWLSSRILPEPFAVLKAAWNLSASGELWRHLAVSSGRA 91
           G + GW++P+  L+  E  A+   + +R+LP P  +    W+L+  GEL  H+A S  R 
Sbjct: 24  GRFTGWIVPLAFLLLVEAGARLELIPARLLPPPSELAHTLWSLAQRGELLPHIAASLARV 83

Query: 92  ASGFAVGAGLGLILGLLSGSLRSANXRPEP 121
           A+GF +G+ L + LGLL G  R A    EP
Sbjct: 84  AAGFVIGSALAVALGLLVGISRRAEALLEP 113


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.130    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 209,330
Number of extensions: 4440
Number of successful extensions: 35
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 3
Length of query: 122
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 48
Effective length of database: 1,269,480
Effective search space: 60935040
Effective search space used: 60935040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)