BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0030.p (155 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310979|ref|YP_003775071.1| alkanesulfonates ABC transporte... 300 5e-83 gi|300309716|ref|YP_003773808.1| nitrate/sulfonate/bicarbonate A... 130 4e-32 gi|300309985|ref|YP_003774077.1| nitrate/sulfonate/bicarbonate A... 128 3e-31 gi|300311644|ref|YP_003775736.1| taurine ABC transporter permeas... 112 1e-26 gi|300310817|ref|YP_003774909.1| nitrate/sulfonate/bicarbonate A... 89 2e-19 >gi|300310979|ref|YP_003775071.1| alkanesulfonates ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 279 Score = 300 bits (767), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 150/155 (96%), Positives = 154/155 (99%) Query: 1 MVRNIPALALIPLVILWFGIDETAKLFLVSVGVFFPVYLNTFHGIRSVDQGLIEMARSYG 60 MVRNIPALALIPLVILWFGIDETAKLFLVSVGVFFPVYLNTFHGIRSVDQGLIEMA+SYG Sbjct: 125 MVRNIPALALIPLVILWFGIDETAKLFLVSVGVFFPVYLNTFHGIRSVDQGLIEMAKSYG 184 Query: 61 LSGWPLYRDVILPGALPSILVGLRFALGLVWVLLIVAETISAQAGIGYMTMNAREFLQTD 120 LSGWPLYRDVILPGALP+ILVGLRFALGLVWVLLIVAETISAQAGIGYMTMNAREFLQTD Sbjct: 185 LSGWPLYRDVILPGALPAILVGLRFALGLVWVLLIVAETISAQAGIGYMTMNAREFLQTD 244 Query: 121 VVLVGILLYALLGKLADTAARALERYFLRWHPGYQ 155 VVLVGILLYALLGKLADTAAR LER++LRWHPGYQ Sbjct: 245 VVLVGILLYALLGKLADTAARWLERFWLRWHPGYQ 279 >gi|300309716|ref|YP_003773808.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 273 Score = 130 bits (327), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 66/155 (42%), Positives = 95/155 (61%) Query: 1 MVRNIPALALIPLVILWFGIDETAKLFLVSVGVFFPVYLNTFHGIRSVDQGLIEMARSYG 60 ++R IP +A IPL ILWFG+ LFL+S+G FFPV +NT G+R VD + AR+ G Sbjct: 118 VIRPIPPIAYIPLAILWFGLGNPPALFLISLGAFFPVLMNTIAGVRQVDSIYLRAARNLG 177 Query: 61 LSGWPLYRDVILPGALPSILVGLRFALGLVWVLLIVAETISAQAGIGYMTMNAREFLQTD 120 S L+ V+LP A+P IL G+R +G ++++IVAE I+ G+G+ M ARE+ +D Sbjct: 178 ASQSTLFLRVMLPAAVPYILSGVRIGIGTAFIVVIVAEMIAVSNGLGFRIMEAREYFWSD 237 Query: 121 VVLVGILLYALLGKLADTAARALERYFLRWHPGYQ 155 ++ G++ LLG D L Y LRWH G + Sbjct: 238 KIIAGMITIGLLGLAIDLGMSRLNNYMLRWHRGLE 272 >gi|300309985|ref|YP_003774077.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 278 Score = 128 bits (321), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 72/150 (48%), Positives = 100/150 (66%) Query: 2 VRNIPALALIPLVILWFGIDETAKLFLVSVGVFFPVYLNTFHGIRSVDQGLIEMARSYGL 61 +R IP+LA IPL++LW GIDET K+ L+++G FFPVYLN GIR +D LIE+ + GL Sbjct: 118 LRAIPSLAWIPLLLLWLGIDETPKVVLIAIGAFFPVYLNLVAGIRDIDHKLIEVGTTSGL 177 Query: 62 SGWPLYRDVILPGALPSILVGLRFALGLVWVLLIVAETISAQAGIGYMTMNAREFLQTDV 121 + L ++LP +LP + GLR L L W+ L+ AE I+A G+GY+ + RE + D+ Sbjct: 178 NTQALIGHILLPASLPYLFAGLRGGLSLAWMFLVAAELIAATKGVGYLLSDGRESSRPDL 237 Query: 122 VLVGILLYALLGKLADTAARALERYFLRWH 151 VL IL+ ALLGKL+D RA+E+ L W Sbjct: 238 VLAAILILALLGKLSDGLLRAVEQKSLGWR 267 >gi|300311644|ref|YP_003775736.1| taurine ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 293 Score = 112 bits (281), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 60/138 (43%), Positives = 82/138 (59%) Query: 14 VILWFGIDETAKLFLVSVGVFFPVYLNTFHGIRSVDQGLIEMARSYGLSGWPLYRDVILP 73 +I+W GI E +K+ L+++ +F PV L+ G+RS+ Q + A S G + W L +V+LP Sbjct: 153 MIIWLGIGEASKITLLTLAMFAPVVLSAQAGVRSLPQERVNAALSLGATRWQLLTEVVLP 212 Query: 74 GALPSILVGLRFALGLVWVLLIVAETISAQAGIGYMTMNAREFLQTDVVLVGILLYALLG 133 ALP IL G+R ALG+ W L+ AE I++ GIGYM M+A FL TD V VGI L A Sbjct: 213 SALPEILTGIRIALGVGWSTLVAAELIASNRGIGYMIMSASHFLATDAVFVGIALIATCA 272 Query: 134 KLADTAARALERYFLRWH 151 R LER + W Sbjct: 273 FAFSYGMRLLERALVPWK 290 >gi|300310817|ref|YP_003774909.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 256 Score = 88.6 bits (218), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 51/146 (34%), Positives = 80/146 (54%) Query: 3 RNIPALALIPLVILWFGIDETAKLFLVSVGVFFPVYLNTFHGIRSVDQGLIEMARSYGLS 62 R IP +A + L ++W G E +K+ L+ F V LNT G+++V+ + A S G Sbjct: 107 RFIPPIAFVTLAVIWLGPGELSKIALIFYTTVFIVTLNTIAGVQAVNPLRLRAAASLGAG 166 Query: 63 GWPLYRDVILPGALPSILVGLRFALGLVWVLLIVAETISAQAGIGYMTMNAREFLQTDVV 122 W + VILP +P ++ G R A+G ++ ++ AE +SA+ G+G + AR F +T+ V Sbjct: 167 QWKILSTVILPSTVPFMVTGARIAMGNSFLTVVSAEIVSAREGLGALIWTARNFSRTEWV 226 Query: 123 LVGILLYALLGKLADTAARALERYFL 148 VGI+ +LG L D R R L Sbjct: 227 FVGIIALGILGYLFDRVLRVATRKLL 252 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.330 0.146 0.452 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 461,053 Number of extensions: 19054 Number of successful extensions: 141 Number of sequences better than 1.0e-08: 17 Number of HSP's gapped: 138 Number of HSP's successfully gapped: 17 Length of query: 155 Length of database: 1,619,870 Length adjustment: 78 Effective length of query: 77 Effective length of database: 1,250,540 Effective search space: 96291580 Effective search space used: 96291580 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 126 (53.1 bits)