BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0024.p (301 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310985|ref|YP_003775077.1| sulfate ABC transporter permeas... 561 e-161 gi|300310984|ref|YP_003775076.1| sulfate ABC transporter permeas... 131 6e-32 gi|300311432|ref|YP_003775524.1| molybdate ABC transporter perme... 115 4e-27 gi|300312150|ref|YP_003776242.1| molybdate ABC transporter perme... 83 2e-17 gi|300309934|ref|YP_003774026.1| sulfate ABC transporter permeas... 70 2e-13 >gi|300310985|ref|YP_003775077.1| sulfate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 299 Score = 561 bits (1447), Expect = e-161, Method: Compositional matrix adjust. Identities = 286/300 (95%), Positives = 291/300 (97%), Gaps = 2/300 (0%) Query: 1 MSAAPVSAAPQANAIARGEPPLTPGAITEPWWVRALLIGIALAFLTLFLFVPLVAVFYEA 60 MSAAP+SAA QA IARGEPPLTP A EP+WVRALLIGIALAFLTLFLFVPLVAVFYEA Sbjct: 1 MSAAPISAAHQA--IARGEPPLTPAATAEPFWVRALLIGIALAFLTLFLFVPLVAVFYEA 58 Query: 61 LRKGWDVYVASITEPDAWSAIKLTLVAAAIAVPLNLVFGVAAAWAIAKFEFRGKNVLLTL 120 LRKGWDVYVASITE DAWSAIKLTL+ AAIAVPLNLVFGVAAAWAIAKFEFRGKN+LLTL Sbjct: 59 LRKGWDVYVASITEADAWSAIKLTLITAAIAVPLNLVFGVAAAWAIAKFEFRGKNLLLTL 118 Query: 121 IDLPFSVSPVISGLIYVLLFGLQGYFGPWLREHDIKILFAVPGIVLATIFVTFPFVAREL 180 IDLPFSVSPVISGLIYVLLFGLQGY GPWLREHDIKILFAVPGIVLATIFVTFPFVAREL Sbjct: 119 IDLPFSVSPVISGLIYVLLFGLQGYLGPWLREHDIKILFAVPGIVLATIFVTFPFVAREL 178 Query: 181 IPLMQSQGSEEEEAALVLGASGWRTFWHVTLPNIKWGLLYGVILCNARAMGEFGAVSVVS 240 IPLMQSQGSEEEEAALVLGASGWRTFWHVTLPNIKWGLLYGVILCNARAMGEFGAVSVVS Sbjct: 179 IPLMQSQGSEEEEAALVLGASGWRTFWHVTLPNIKWGLLYGVILCNARAMGEFGAVSVVS 238 Query: 241 GHIRGETNTIPLQVEILYNEFNITGAFAVASLLAFLAVVTLAIKSVIEWRLHQQHSASEQ 300 GHIRGETNTIPLQVEILYNEFNITGAFAVASLLAFLA+VTLAIKSVIEWRLHQQHSASEQ Sbjct: 239 GHIRGETNTIPLQVEILYNEFNITGAFAVASLLAFLALVTLAIKSVIEWRLHQQHSASEQ 298 >gi|300310984|ref|YP_003775076.1| sulfate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 296 Score = 131 bits (330), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 81/262 (30%), Positives = 144/262 (54%), Gaps = 1/262 (0%) Query: 36 LLIGIALAFLTLFLFVPLVAVFYEALRKGWDVYVASITEPDAWSAIKLTLVAAAIAVPLN 95 L +G L +L L + +PL A+F + W+ ++ ++T P ++ +L+ A+ I LN Sbjct: 32 LSLGFTLFYLALIVLIPLSALFLKTFTLTWEGFIEAVTSPRVMASYRLSFGASLIGAFLN 91 Query: 96 LVFGVAAAWAIAKFEFRGKNVLLTLIDLPFSVSPVISGLIYVLLFGLQGYFGPWLREHDI 155 ++FG AW + ++ F GK ++ L+DLPF++ ++G+ L+ G+ G L I Sbjct: 92 VIFGGIVAWVLVRYRFPGKRIIDALVDLPFALPTAVAGIALTTLYSQNGWLGKLLAPLGI 151 Query: 156 KILFAVPGIVLATIFVTFPFVARELIPLMQSQGSEEEEAALVLGASGWRTFWHVTLPNIK 215 K+ F G+++A F+ PFV R + P+++ E EEAA LGAS W+TF V P + Sbjct: 152 KVAFTPLGVLVALTFIGLPFVVRTVQPVLEEAERELEEAAASLGASRWQTFTRVIFPTVL 211 Query: 216 WGLLYGVILCNARAMGEFGAVSVVSGHIRGETNTIPLQVEILYNEFNITGAFAVASLLAF 275 LL G L ARA GE+G+V ++G++ + PL + +++ GA A+A ++ Sbjct: 212 PALLTGFALAFARASGEYGSVVFIAGNMPMVSEITPLFIVTKLEQYDYAGATAIAMVMLL 271 Query: 276 LAVVTLAIKSVIE-WRLHQQHS 296 ++ V L ++++ W + S Sbjct: 272 VSFVLLLTINLLQAWTRKRGQS 293 >gi|300311432|ref|YP_003775524.1| molybdate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 224 Score = 115 bits (288), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 121/222 (54%), Gaps = 4/222 (1%) Query: 78 WSAIKLTLVAAAIAVPLNLVFGVAAAWAIAKFEFRGKNVLLTLIDLPFSVSPVISGLIYV 137 W+ + L+L A +A LNLV GVAAA+ ++++ ++ + +++ LP + P + G + Sbjct: 5 WTPLLLSLKVAGLATLLNLVLGVAAAYGLSRWRSALRDFIDSVLTLPLVLPPTVLGYYLL 64 Query: 138 LLFGLQGYFGPWLREHDIKILFAVPGIVLATIFVTFPFVARELIPLMQSQGSEEEEAALV 197 +LFG +G G WL I+++F G VLA+ V FP V + +S + E+AA V Sbjct: 65 VLFGRRGALGAWLERMGIELVFTWQGAVLASTVVAFPLVLKSARAAFESVDHQMEDAARV 124 Query: 198 LGASGWRTFWHVTLPNIKWGLLYGVILCNARAMGEFGAVSVVSGHIRGETNTIPLQVEIL 257 LG S F+ V+LP G++ GV+L ARA+GEFGA +V+G++ G T T+ + + Sbjct: 125 LGVSEAGVFFRVSLPLAMRGIMAGVLLAFARALGEFGATLMVAGNLPGRTQTLSVAI--- 181 Query: 258 YNEFNITGAFAVASLLAFLAVVTLAIKSVIEWRLHQQHSASE 299 Y G A+LL + +T + ++ RL + + Sbjct: 182 YEAVQ-AGDDGSATLLVVITSITCIVLLMVAGRLTPDRAQQQ 222 >gi|300312150|ref|YP_003776242.1| molybdate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 250 Score = 83.2 bits (204), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 111/233 (47%), Gaps = 7/233 (3%) Query: 76 DAWSAIKLTLVAAAIAVPLNLVFGVAAAWAIAKFEFRGKNVLLTLIDLPFSVSPVISGLI 135 + WSA++LTL A+I L L+ G AW +A+ ++ + ++ LP + P + G Sbjct: 6 EDWSAVRLTLSLASIVTVLLLLLGTPLAWWLARTRSGWRHGVAAVVALPLVLPPAVLGFY 65 Query: 136 YVLLFGLQGYFGPWLREHDIKIL-FAVPGIVLATIFVTFPFVARELIPLMQSQGSEEEEA 194 ++L G QG G + + +L F+ G+VLA++ + PFV + L ++ G E Sbjct: 66 LLVLMGPQGPVGQLTQALGLGLLPFSFGGLVLASLLYSMPFVVQPLQNAFEAVGERPMEV 125 Query: 195 ALVLGASGWRTFWHVTLPNIKWGLLYGVILCNARAMGEFGAVSVVSGHIRGETNTIPLQV 254 A L AS F+ V +P G L +L A +GEFG V ++ G+I G+T + +Q+ Sbjct: 126 AATLRASPLDAFFTVAVPLAGPGFLTAAVLGFAHTVGEFGVVLMIGGNIPGKTRVLSMQI 185 Query: 255 EILYNEF------NITGAFAVASLLAFLAVVTLAIKSVIEWRLHQQHSASEQA 301 F + GA V S L L ++ L + + A ++A Sbjct: 186 YDHVEAFEYAQAHRLAGAMLVFSFLVLLVMMRLGRAGKTRLKAGKSGRAPQEA 238 >gi|300309934|ref|YP_003774026.1| sulfate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 291 Score = 70.1 bits (170), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/225 (25%), Positives = 104/225 (46%), Gaps = 11/225 (4%) Query: 63 KGWDVYVASITEPDAWSAIKLTLVAAAIAVPLNLVFGVAAAWAIAKFEFRGKNVLLTLID 122 G Y++ +T ++++ TL +A L V + + F G+ +LL ++ Sbjct: 58 DGAMAYLSVLTNRHYFASLVSTLALSAAVTAATLAISVFVGLFLQRHRFPGQALLLAMLT 117 Query: 123 LPFSVSPVISGLIYVLLFGLQGYFGPW---LREHDIKILFAVPGIVLATIFVTFPFVARE 179 P + V+ G + ++L G QG G L + +++ G+ L ++ + P V Sbjct: 118 FPLAFPGVVVGFMVIMLAGRQGLIGALTNGLFGESLVFAYSLAGLFLGYLYFSIPRVILT 177 Query: 180 LIPLMQSQGSEEEEAALVLGASGWRTFWHVTLPNIKWGLLYGVILCNARAMGEFGAVSVV 239 ++ + EEAA LGA W+ HV LP + L+ +C A ++G FG + Sbjct: 178 VVAAAEKLDPSLEEAARSLGARPWQVLLHVVLPALLPALVSSGAICFATSVGAFGTAFTL 237 Query: 240 SGHIRGETNTIPLQVEILYNEFNITGAFAVASLLAF-LAVVTLAI 283 + +I + +P+ + YNEF FA A+ L+ L V+T A+ Sbjct: 238 AANI----DVLPMTI---YNEFTGYANFATAASLSIVLGVITWAV 275 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.325 0.139 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 898,621 Number of extensions: 37866 Number of successful extensions: 262 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 260 Number of HSP's successfully gapped: 11 Length of query: 301 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 216 Effective length of database: 1,217,395 Effective search space: 262957320 Effective search space used: 262957320 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 130 (54.7 bits)