BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0018.p
         (231 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310988|ref|YP_003775080.1| hypothetical protein Hsero_1659...   261   3e-71

>gi|300310988|ref|YP_003775080.1| hypothetical protein Hsero_1659
           [Herbaspirillum seropedicae SmR1]
          Length = 280

 Score =  261 bits (667), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 132/182 (72%), Positives = 149/182 (81%), Gaps = 8/182 (4%)

Query: 1   MMTFTARSPALARLTVLRRALGLPATVLAMALPLAAQADITPVSPAQCAQMRASKVITSG 60
           MMT  A      RL        L   + ++AL  AA ADITPVS AQCA+M++SKVIT+G
Sbjct: 1   MMTLPALPSLFPRL--------LCGLLTSLALAQAAHADITPVSAAQCARMKSSKVITAG 52

Query: 61  NPVPCARLATVSFDYTDFGGATRQGSVVVLDALAPQVEALFGELLLRSFPLAGAQGLEAY 120
           NPVPC RLATVSFDY D  GA R+G+VVVLDA+AP+VEALFGELLLRSFPLAGAQ +EA+
Sbjct: 53  NPVPCQRLATVSFDYNDSEGAVRRGAVVVLDAIAPEVEALFGELLLRSFPLAGAQPMEAF 112

Query: 121 DGDDQRSMAANNSSAFNGRPMTGGGSWSKHAYGAAIDINPLQNPYVSKAGSPEQEVLPPQ 180
           +GDDQRSMAANN+SAFNGRPMTGGG WSKHAYGAAIDINPLQNPYVS+AGSP QEVLPP 
Sbjct: 113 EGDDQRSMAANNTSAFNGRPMTGGGGWSKHAYGAAIDINPLQNPYVSQAGSPTQEVLPPA 172

Query: 181 GA 182
           G+
Sbjct: 173 GS 174


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.127    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 686,850
Number of extensions: 30178
Number of successful extensions: 84
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 149
Effective length of database: 1,231,600
Effective search space: 183508400
Effective search space used: 183508400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)