BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0011.p (120 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC t... 214 1e-57 gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC t... 122 7e-30 gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC t... 122 8e-30 gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPa... 107 4e-25 gi|300313300|ref|YP_003777392.1| branched-chain amino acid ABC t... 106 5e-25 >gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 258 Score = 214 bits (546), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 104/109 (95%), Positives = 106/109 (97%) Query: 1 MNPTVKTMLEVSNLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYQP 60 MN +VKTMLEVSNLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFY+P Sbjct: 1 MNASVKTMLEVSNLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYRP 60 Query: 61 TSGEIALDGVSIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQH 109 TSGEI LDG SIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQH Sbjct: 61 TSGEIMLDGASIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQH 109 >gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 122 bits (307), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 53/107 (49%), Positives = 79/107 (73%) Query: 6 KTMLEVSNLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYQPTSGEI 65 +T+L++ ++S RFGGL A++GV + ++ +++ +IGPNGAGKTT FN I+G YQP +G Sbjct: 3 QTLLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTGTF 62 Query: 66 ALDGVSIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQHLRS 112 LDG + H+VA+ G+ RTFQNIRLF MTV+EN++V H+R+ Sbjct: 63 ELDGKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRT 109 >gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 122 bits (306), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 53/107 (49%), Positives = 79/107 (73%) Query: 6 KTMLEVSNLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYQPTSGEI 65 +T+L++ ++S RFGGL A++GV + ++ +++ +IGPNGAGKTT FN I+G YQP +G Sbjct: 3 QTLLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTGTF 62 Query: 66 ALDGVSIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQHLRS 112 LDG + H+VA+ G+ RTFQNIRLF MTV+EN++V H+R+ Sbjct: 63 ELDGKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRT 109 >gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 107 bits (266), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 47/102 (46%), Positives = 73/102 (71%) Query: 8 MLEVSNLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYQPTSGEIAL 67 +L+++++S FGGL + GV+ V++ E+F +IGPNGAGKTTVFN I+G + +SG I Sbjct: 2 LLQLNDISKNFGGLQVLQGVNFNVRQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIRF 61 Query: 68 DGVSIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQH 109 + I H++ ++G+ RTFQNIR+FK MT++EN++V H Sbjct: 62 NDDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMH 103 >gi|300313300|ref|YP_003777392.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 597 Score = 106 bits (264), Expect = 5e-25, Method: Composition-based stats. Identities = 47/105 (44%), Positives = 71/105 (67%) Query: 8 MLEVSNLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYQPTSGEIAL 67 +LEV ++ RFGGL+AV+ VS V+ E+ +IGPNGAGK+T FN ++G + G + Sbjct: 345 LLEVDQINKRFGGLVAVNDVSFKVKAGEIVGLIGPNGAGKSTTFNLVTGLLHASGGRVGF 404 Query: 68 DGVSIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQHLRS 112 +G IA P+ +A+ G+ RTFQ++RL MTV+EN+ + H+RS Sbjct: 405 NGRDIAGLPARAIARLGIARTFQHVRLLPGMTVLENVALGAHMRS 449 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.136 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 333,950 Number of extensions: 12409 Number of successful extensions: 241 Number of sequences better than 1.0e-08: 82 Number of HSP's gapped: 225 Number of HSP's successfully gapped: 82 Length of query: 120 Length of database: 1,619,870 Length adjustment: 74 Effective length of query: 46 Effective length of database: 1,269,480 Effective search space: 58396080 Effective search space used: 58396080 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 125 (52.8 bits)