BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0009.p (289 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC t... 459 e-130 gi|300312240|ref|YP_003776332.1| amino acid ABC transporter ATPa... 254 5e-69 gi|300311116|ref|YP_003775208.1| branched-chain amino acid ABC t... 230 9e-62 gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC t... 224 4e-60 gi|300309522|ref|YP_003773614.1| branched-chain amino acid ABC t... 224 4e-60 >gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 235 Score = 459 bits (1182), Expect = e-130, Method: Compositional matrix adjust. Identities = 227/233 (97%), Positives = 230/233 (98%) Query: 1 MMLQFDKVHTHYGAIEALHGVSLTVEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGRVL 60 MMLQFDKVHTHYGAIEALHGVSL VEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGRV+ Sbjct: 1 MMLQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGRVI 60 Query: 61 FEGQDITQLPTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNEDIERGIEYVFGL 120 FEGQDITQL THEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNE IE+GIEYVFGL Sbjct: 61 FEGQDITQLQTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNEAIEQGIEYVFGL 120 Query: 121 FPRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFEIIRTI 180 FPRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIF+IIRTI Sbjct: 121 FPRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFDIIRTI 180 Query: 181 RESGVTVFLVEQNANKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYLG 233 RESGVTVFLVEQNANKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYLG Sbjct: 181 RESGVTVFLVEQNANKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYLG 233 >gi|300312240|ref|YP_003776332.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 243 Score = 254 bits (649), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 125/233 (53%), Positives = 170/233 (72%), Gaps = 1/233 (0%) Query: 2 MLQFDKVHTHYGAIEALHGVSLTVEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGRVLF 61 +LQ + + YG IEA+ G+SL++ +GEI L+GANGAGK+T L+ + G +A GRVL Sbjct: 10 ILQVEDLAVAYGHIEAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQRGRVLL 69 Query: 62 EGQDITQLPTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNED-IERGIEYVFGL 120 GQD+ Q+ H I+ G+ EGR +LTV ENL +GA+ ++D + R +E+V+ L Sbjct: 70 HGQDLLQMSPHRIVESGVVQVAEGRATLTTLTVEENLGLGAYTRKDKDGVARDLEWVYSL 129 Query: 121 FPRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFEIIRTI 180 FP LK RAA AG +SGGEQQMLAIGRALM+KP++LLLDEP++GLAPL+I +IF I++ I Sbjct: 130 FPVLKNRAAGLAGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIFRIVQEI 189 Query: 181 RESGVTVFLVEQNANKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYLG 233 ++G+TV LVEQN +AL +A RGYVLE G +V+ D+GANLL N V +AYLG Sbjct: 190 NKTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLG 242 >gi|300311116|ref|YP_003775208.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 230 bits (587), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 120/237 (50%), Positives = 160/237 (67%), Gaps = 5/237 (2%) Query: 2 MLQFDKVHTHYGAIEALHGVSLTVEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGRVLF 61 ML +H YG +E LHG+S+ V KG++VTLIG+NGAGKTT + + G + G V Sbjct: 1 MLTISNLHAAYGKVEVLHGISMEVPKGKVVTLIGSNGAGKTTTMRAISGMIKPKGGEVTL 60 Query: 62 EGQDITQLPTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAF--FASNE---DIERGIEY 116 G++IT L +H+I R GLA SPEGRRVF +++V +NL +GAF F DI +E Sbjct: 61 GGKNITGLDSHKIARFGLAHSPEGRRVFATMSVTDNLLLGAFPRFTRARPKGDIAHDLER 120 Query: 117 VFGLFPRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFEI 176 LFPRLKER +Q AGT+SGGEQQMLA+ RA+M P ++LLDEP++GLAP+++ ++F I Sbjct: 121 ALELFPRLKERQSQLAGTLSGGEQQMLAMARAVMLNPEVILLDEPSMGLAPILVDEVFRI 180 Query: 177 IRTIRESGVTVFLVEQNANKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYLG 233 I ++E GVT+ LVEQ A AL VAD GYVLENG + + L + V+ AYLG Sbjct: 181 IVRLKEQGVTMLLVEQFAAAALNVADYGYVLENGKISVHGPADKLQNDPAVKAAYLG 237 >gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 241 Score = 224 bits (572), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 115/235 (48%), Positives = 162/235 (68%), Gaps = 3/235 (1%) Query: 2 MLQFDKVHTHYGAIEALHGVSLTVEKGEIVTLIGANGAGKTTLLMTLCGRPRAS--SGRV 59 +L+ ++ YG I+A+ G+ L V +GE+VTLIGANGAGKTT L + G AS G + Sbjct: 5 ILKVQQLSVAYGGIQAVKGIDLEVNEGELVTLIGANGAGKTTTLKAITGTLPASRVEGHI 64 Query: 60 LFEGQDITQLPTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNE-DIERGIEYVF 118 + GQ + + E+++ LA+ PEGR VF +++ ENL MGA+ + ++ I I+ F Sbjct: 65 EYLGQPLKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGAYTSDDKGQIAADIDKWF 124 Query: 119 GLFPRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFEIIR 178 +FPRLKERAAQ AGT+SGGEQQMLA+ RALMS P+LLLLDEP++GL+P+++ +IFE+IR Sbjct: 125 AVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPKLLLLDEPSMGLSPIMVEKIFEVIR 184 Query: 179 TIRESGVTVFLVEQNANKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYLG 233 + G+T+ LVEQNA AL A RGYV+E+G + M +L + V+ AYLG Sbjct: 185 NVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMQGQAQQMLDDPRVKAAYLG 239 >gi|300309522|ref|YP_003773614.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 241 Score = 224 bits (572), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 115/235 (48%), Positives = 162/235 (68%), Gaps = 3/235 (1%) Query: 2 MLQFDKVHTHYGAIEALHGVSLTVEKGEIVTLIGANGAGKTTLLMTLCGRPRAS--SGRV 59 +L+ ++ YG I+A+ G+ L V +GE+VTLIGANGAGKTT L + G AS G + Sbjct: 5 ILKVQQLSVAYGGIQAVKGIDLEVNEGELVTLIGANGAGKTTTLKAITGTLPASRVEGHI 64 Query: 60 LFEGQDITQLPTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNE-DIERGIEYVF 118 + GQ + + E+++ LA+ PEGR VF +++ ENL MGA+ + ++ I I+ F Sbjct: 65 EYLGQPLKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGAYTSDDKGQIAADIDKWF 124 Query: 119 GLFPRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFEIIR 178 +FPRLKERAAQ AGT+SGGEQQMLA+ RALMS P+LLLLDEP++GL+P+++ +IFE+IR Sbjct: 125 AVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPKLLLLDEPSMGLSPIMVEKIFEVIR 184 Query: 179 TIRESGVTVFLVEQNANKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYLG 233 + G+T+ LVEQNA AL A RGYV+E+G + M +L + V+ AYLG Sbjct: 185 NVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMQGQAQQMLDDPRVKAAYLG 239 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.138 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 836,369 Number of extensions: 32688 Number of successful extensions: 515 Number of sequences better than 1.0e-08: 133 Number of HSP's gapped: 323 Number of HSP's successfully gapped: 149 Length of query: 289 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 205 Effective length of database: 1,222,130 Effective search space: 250536650 Effective search space used: 250536650 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)