BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0021.0091.p (338 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310416|ref|YP_003774508.1| MocR family transcription regul... 272 3e-74 gi|300311139|ref|YP_003775231.1| MocR family transcription regul... 120 2e-28 gi|300313928|ref|YP_003778020.1| GntR family transcription regul... 94 1e-20 gi|300311074|ref|YP_003775166.1| transcription regulator protein... 84 1e-17 gi|300311016|ref|YP_003775108.1| MocR family transcription regul... 80 3e-16 >gi|300310416|ref|YP_003774508.1| MocR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 516 Score = 272 bits (695), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 142/327 (43%), Positives = 199/327 (60%), Gaps = 2/327 (0%) Query: 3 LAYGDPLGEPALREAIAQYLRVARGVRCEAGQVVVTEGSQGALSLCVRLFANPGERAWLE 62 L YG G LRE IA+YLRVAR V C QV++T G +L + V+L G+ AW+E Sbjct: 187 LTYGPGAGYAGLREQIAEYLRVARSVNCTPSQVLITTGIHQSLDIVVKLLGEHGDSAWVE 246 Query: 63 DPGYGGVRAAFHAGDMKIRSMPVDEEGILIAERAWRSPPRLIHVTPSHQYPTGAVLSLAR 122 DP Y G R+ ++ ++ + VD+EG+ + R PPR I TPSHQYP G V+SL+R Sbjct: 247 DPCYWGTRSVLNSLGIQSVPIAVDQEGMRMRLANLRRPPRFICTTPSHQYPLGMVMSLSR 306 Query: 123 RLALIARAREHGCWIIEDDYDSDFRHHGHPIPAMQGLVPDAPVLYVGTFSKTLFPGLRIG 182 R L+ A H WIIEDDYDS+FR+ G P+ ++QG+ VLY+GTFSK +FPGLRIG Sbjct: 307 RRMLLEYAATHKVWIIEDDYDSEFRYGGRPLASLQGMDTQDRVLYMGTFSKIMFPGLRIG 366 Query: 183 FLVLPSSVGEGAGRALSELLRGGHRLEQLALAEFMAGGQFARHLGRMKRLYRERQQALRA 242 FLV+P S+ ++EL R G Q LA+FMA G FA H+ +M+ LY ER Q L+ Sbjct: 367 FLVVPESLARAFSTGIAELYRNGQVFLQATLADFMAEGHFASHIRKMRVLYAERLQLLQQ 426 Query: 243 ALQAQLPE-FGISGGDSGLHLTLRLPPDCPDTAVSTAARAAGMNVGALSSFSAGPAQAGN 301 ++ E I+GG++GLHL L LP +C D + A AAG+ V LS + A+ Sbjct: 427 SINRHFGEKMTITGGEAGLHLVLGLPQECDDVLICEQALAAGIVVRPLSRYYMH-ARGAR 485 Query: 302 NGLVIGYGNTSHEQYAALIRRLAGIVR 328 GL++GY + +++ A +LA +++ Sbjct: 486 RGLLLGYASVPNDEIARAFDKLAAVIK 512 >gi|300311139|ref|YP_003775231.1| MocR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 398 Score = 120 bits (301), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 98/330 (29%), Positives = 151/330 (45%), Gaps = 7/330 (2%) Query: 1 MALAYGDPLGEPALREAIAQYLRVARGVRCEAGQVVVTEGSQGALSLCVRLFANPGERAW 60 MAL YG G LRE IA L G + A QV++ GSQ L L ++ + G + Sbjct: 69 MALQYGPTDGYLPLREWIAASLST-NGAQISAEQVLMVSGSQQGLDLLGKVLIDEGSKVL 127 Query: 61 LEDPGYGGVRAAFHAGDMKIRSMPVDEEGILIAE-RAWRSPPRLIHVTPSHQYPTGAVLS 119 +E P Y G AF K S+P DE G+ A R+++ P+ Q PTG L Sbjct: 128 VETPSYLGALQAFALYGAKFESVPSDEFGLQPETIEAIAGGARMLYSLPNFQNPTGRTLP 187 Query: 120 LARRLALIARAREHGCWIIEDDYDSDFRHHGHPIPAMQGLVPDAPVLYVGTFSKTLFPGL 179 RR L+ G +IEDD + P+P M + P V+Y+G+FSK L PG+ Sbjct: 188 TERRFKLVETCARLGLPLIEDDPYGALSYQNAPLPKMLSMNPSG-VIYMGSFSKVLTPGI 246 Query: 180 RIGFLVLPSSVGEGAGRALSELLRGGHRLEQLALAEFMAGGQFARHLGRMKRLYRERQQA 239 R+G++V P + +A +L Q+ + E + G +H+ +++LY ++ QA Sbjct: 247 RLGYVVAPRPLILKMEQAKQATDLHTAQLTQMVVYEAIKDGFLDQHVPTIRKLYGDQCQA 306 Query: 240 LRAALQAQLP-EFGISGGDSGLHLTLRLPPDCPDTA-VSTAARAAGMNVGALSSFSAGPA 297 + ALQ P S + G+ + + LP A ++ A + + F A A Sbjct: 307 MLDALQQYFPASCSWSKPEGGMFIWVTLPEHIDAGALLNEAVEQEKVAFVPGAPFYANVA 366 Query: 298 QAGNNGLVIGYGNTSHEQYAALIRRLAGIV 327 Q N L + + EQ A + RL ++ Sbjct: 367 Q--KNTLRLSFVTVPPEQIRAGVERLGKLI 394 >gi|300313928|ref|YP_003778020.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 472 Score = 94.4 bits (233), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 69/259 (26%), Positives = 113/259 (43%), Gaps = 18/259 (6%) Query: 3 LAYGDPLGEPALREAIAQYL---RVARGVRCEAGQVVVTEGSQGALSLCVRLFANPGERA 59 + YG P G LR+ I Q+L + G+ QV+ T G+ AL L +R PG+ Sbjct: 154 VGYGHPYGYAPLRQLITQFLGHWSLELGIE----QVLTTHGATQALDLVIRTMTQPGDTV 209 Query: 60 WLEDPGYGGVRAAFHAGDMKIRSMPVDEEGI---LIAERAWRSPPRLIHVTPSHQYPTGA 116 ++DPGY + A + + +P G+ ++ A P++ T Q PTG Sbjct: 210 LIDDPGYCNLIAMLRLAGLNVIGVPRTPGGVDTDVLETLARTHHPKMFFTTSVLQNPTGT 269 Query: 117 VLSLARRLALIARAREHGCWIIEDDYDSDFRHHGHPI-PAMQGLVPDAPVLYVGTFSKTL 175 + A + ++ A HG W++EDD FR G P + L V+YVG++SKT+ Sbjct: 270 SYTPACAMRVLQAAERHGFWVVEDDI---FRELGQATDPMLAALDGLQRVIYVGSYSKTI 326 Query: 176 FPGLRIGFLVLPSSVGEGAGRALSELLRGGHRLEQLALAEFMAGGQFARHLGRMKRLYRE 235 P LR+G++ + L + + + + G RH+ + Sbjct: 327 APSLRVGYIACQRELARQIVHTKMVLTLTNSEINERLVHNVLTEGHHRRHVQTLNATLLS 386 Query: 236 RQQALRAALQAQLPEFGIS 254 Q A L A+L E G++ Sbjct: 387 AQ----ATLNAKLSEVGLT 401 >gi|300311074|ref|YP_003775166.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 516 Score = 84.3 bits (207), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 79/330 (23%), Positives = 153/330 (46%), Gaps = 22/330 (6%) Query: 10 GEPALREAIAQYLRVARGVRCEAGQVVVTEGSQGALSLCVRLFANPGERAWLEDPGYGGV 69 G R+A+A+ A G+R + +VVVT G AL+L +R A PG+ +E P Y G+ Sbjct: 191 GNATFRQAVARRALNA-GMRIDTEEVVVTHGCIEALNLAMRAVAGPGDTIAVESPTYFGL 249 Query: 70 RAAFHAGDMKIRSMP------VDEEGILIAERAWRSPPRLIHVTPSHQYPTGAVLSLARR 123 A MK +P + E + +A R + + ++ V P+ Q P G ++ + Sbjct: 250 LQALENLGMKALEIPTSPHTGISVEALELAVRTYGNIKAVV-VVPNLQNPLGCIMPEDHK 308 Query: 124 LALIARAREHGCWIIEDDYDSDFRHHGHPIPAMQGLVPDAPVLYVGTFSKTLFPGLRIGF 183 L+ + +IEDD ++ +++ + V+Y + +K L PG+R+G+ Sbjct: 309 DQLVRLCDQLKLPLIEDDAYTELADGSVTPSSLKSRDRNGNVIYCASLNKVLAPGMRLGW 368 Query: 184 LVLPSSVGEGAGRALSELLRGGH-----RLEQLALAEFMAGGQFARHLGRMKRLYRERQQ 238 + G ++L+ H Q+ A+F+A + RHL R++++ +++++ Sbjct: 369 M------NGGRWHERVKMLKFTHTRANEEWTQVTAADFIASPAYDRHLRRLRQMLKQQRE 422 Query: 239 ALRAALQAQLPE-FGISGGDSGLHLTLRLPPDCPDTAVSTAARAAGMNVGALSSFSAGPA 297 + ++ A PE ++ + G+ L + LP + A A G+ V + FS + Sbjct: 423 RMAESIAAYFPEGTRLNLPNGGVGLWVELPVQVCSQQLFERALAEGVGVSPGAIFSN--S 480 Query: 298 QAGNNGLVIGYGNTSHEQYAALIRRLAGIV 327 + + I G+ + + +RRL G+V Sbjct: 481 SRYGHFVRICCGHPFNRELDQALRRLGGLV 510 >gi|300311016|ref|YP_003775108.1| MocR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 480 Score = 79.7 bits (195), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 69/245 (28%), Positives = 122/245 (49%), Gaps = 20/245 (8%) Query: 8 PLGEPALREAIAQ-YLRVARGVRCEAGQVVVTEGSQGALSLCVRLFANPGERAWLEDPGY 66 P G P L IA+ YL G++ + ++V+T G+ A++LC++ A PG+ +E P + Sbjct: 155 PPGHPELLRQIARRYLE--NGLKVDPEEIVITVGATEAINLCLQAVARPGDTIAVETPTF 212 Query: 67 GGVRAAFHAGDMKIRSMPVD-EEGILIAERAWRSPPRLI---HVTPSHQYPTGAVLSLAR 122 + A M+ +P D + GI + R + I V P+ Q P G + + Sbjct: 213 YAMLHAIERLGMRALEIPTDPQRGIDVGALEERMKTQAIAACMVMPNFQNPLGFQMPDSE 272 Query: 123 RLALIARAREHGCWIIEDDYDSDFRH-HGHPIPAMQGLVPDAPVLYVGTFSKTLFPGLRI 181 + L+ A +H +IE+ S+ + + HP +++ D VL+ +FSK+L RI Sbjct: 273 KERLVRLAEQHQMPVIENAVYSELYYGNAHP-SSLKNYDRDGLVLHCSSFSKSLTSAYRI 331 Query: 182 GFLVLPSSVGEGAGRALSELLRGGHRL-----EQLALAEFMAGGQFARHLGRMKRLYRER 236 G+ +P G RA E L+ + L Q A+AE++ G + RHL R++R + ++ Sbjct: 332 GW-AMP-----GRYRAQVEKLKFLNTLATPTAPQRAIAEYLTQGGYERHLRRVRRAFAQQ 385 Query: 237 QQALR 241 + +R Sbjct: 386 RDMMR 390 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.138 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,109,087 Number of extensions: 47158 Number of successful extensions: 186 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 168 Number of HSP's successfully gapped: 11 Length of query: 338 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 252 Effective length of database: 1,212,660 Effective search space: 305590320 Effective search space used: 305590320 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)