BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0021.0090.p
         (144 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312101|ref|YP_003776193.1| hypothetical protein Hsero_2790...   221   2e-59
gi|300312037|ref|YP_003776129.1| sensory transduction regulatory...    82   2e-17
gi|300312512|ref|YP_003776604.1| sensory transduction regulatory...    70   5e-14
gi|300313267|ref|YP_003777359.1| response regulator transcriptio...    64   6e-12

>gi|300312101|ref|YP_003776193.1| hypothetical protein Hsero_2790
           [Herbaspirillum seropedicae SmR1]
          Length = 144

 Score =  221 bits (562), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 103/141 (73%), Positives = 122/141 (86%)

Query: 1   MSLTLHLPSVLVVDADLDAIETARFAVWRSQLPCQFEWFDDAELANASLLTKALCRSKEL 60
           M  +  LP +L++DADLDAIETARFA+WRS L C+ EWFDDAELANASLLT+ALC+ ++ 
Sbjct: 1   MVQSQQLPRILIIDADLDAIETARFALWRSHLSCRIEWFDDAELANASLLTQALCQLRDQ 60

Query: 61  PALILLDPRSFTGTEGYELLRTLCIYQQLAHIPLVLFTAAPMSADFALVEDSRIWYAAKP 120
           P LILLDPR+F GTEGYELLRTLC+Y QLA IPLVLFTA+P+S+DFA  +D+RIWYAAKP
Sbjct: 61  PTLILLDPRNFRGTEGYELLRTLCVYPQLAQIPLVLFTASPISSDFAAEQDNRIWYAAKP 120

Query: 121 VRAADYMDLVTRCVKQRLHQP 141
            R ADYM+LVTRCV+QRL QP
Sbjct: 121 ARPADYMELVTRCVQQRLKQP 141


>gi|300312037|ref|YP_003776129.1| sensory transduction regulatory
           protein [Herbaspirillum seropedicae SmR1]
          Length = 140

 Score = 82.0 bits (201), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/131 (38%), Positives = 74/131 (56%), Gaps = 3/131 (2%)

Query: 8   PSVLVVDADLDAIETARFAVWRSQLPCQFEWFDDAELANASLLT-KALCRSKELPALILL 66
           PS+L+VD   +++E ARF +WR++L C F WF+DAE A  SL   +A     +LP LILL
Sbjct: 4   PSILMVDPSPESVELARFGLWRNKLDCAFGWFEDAEGAAQSLFNPQARAHPADLPCLILL 63

Query: 67  DPRSFTGTEGYELLRTLCIYQQLAHIPLVLF-TAAPMSADFALVEDSRIWYAAKPVRAAD 125
           +PR     EG ELL  L  +     +P+V+F T+   +            Y  KPV A  
Sbjct: 64  EPR-LPRMEGLELLHMLRAHAHTRALPVVMFATSQDDADAARARAAGANDYLVKPVDARA 122

Query: 126 YMDLVTRCVKQ 136
           +M+LV++ V++
Sbjct: 123 FMELVSQTVRR 133


>gi|300312512|ref|YP_003776604.1| sensory transduction regulatory
           protein [Herbaspirillum seropedicae SmR1]
          Length = 154

 Score = 70.5 bits (171), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 65/129 (50%), Gaps = 2/129 (1%)

Query: 8   PSVLVVDADLDAIETARFAVWRSQLPCQFEWFDDAELANASLLTKALCRSKELPALILLD 67
           P +L+++++ +A+E ARFA+WRS   C  +W+D+A+ A   LL +       LP LILLD
Sbjct: 4   PIILMIESNGEAVELARFALWRSNFHCVLQWYDEADAAIDGLLHRHRLDDARLPDLILLD 63

Query: 68  PRSFTGTEGYELLRTLCIYQQLAHIPLVLFTAAPMSADFA-LVEDSRIWYAAKPVRAADY 126
           P       G + +  +   +    IP+V+F  +    +   L+E     Y  KP  A  Y
Sbjct: 64  P-GMMENNGVDFILAMKAGRDTRSIPVVVFPDSDYPPEMPDLLEAGASAYLLKPETAPQY 122

Query: 127 MDLVTRCVK 135
           M  V  C +
Sbjct: 123 MQAVVECAQ 131


>gi|300313267|ref|YP_003777359.1| response regulator transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 188

 Score = 63.5 bits (153), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 1/132 (0%)

Query: 5   LHLPSVLVVDADLDAIETARFAVWRSQLPCQFEWFDDAELANASLLTKALCRSKELPALI 64
           +  PS++++D   +A E ARFA+WR+ L C F    D   A   LL+         P+LI
Sbjct: 13  MSFPSIIMIDPSPEAAELARFALWRAGLHCAFRACQDVATARRCLLSGRRSGDCATPSLI 72

Query: 65  LLDPRSFTGTEGYELLRTLCIYQQLAHIPLVLFTAAPMSADFALVEDSRIWYAAKPVRAA 124
           LL+     G +G ELLR L     LA  P+V+F +     +   ++     Y  KP+   
Sbjct: 73  LLESDMECG-DGLELLRELRASSHLAEAPVVVFPSHDTEGEREALDAGATAYLPKPIDGE 131

Query: 125 DYMDLVTRCVKQ 136
            Y   V   V++
Sbjct: 132 RYARCVVEMVER 143


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 436,193
Number of extensions: 15168
Number of successful extensions: 61
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 4
Length of query: 144
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 67
Effective length of database: 1,255,275
Effective search space: 84103425
Effective search space used: 84103425
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 126 (53.1 bits)